Re: [Freesurfer] Multiple comparison - permutation

2018-07-16 Thread Douglas N. Greve
See https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MultipleComparisonsV6.0Perm?highlight=%28permutation%29 On 07/16/2018 02:15 PM, Ting Li wrote: > > External Email - Use Caution > > Hi Douglas, > > I just try your suggestion. It gives me information like the > following. What

Re: [Freesurfer] Multiple comparison - permutation

2018-07-16 Thread Ting Li
External Email - Use Caution Hi Douglas, I just try your suggestion. It gives me information like the following. What does the design matrix stands for? Thanks. Ting ERROR: design matrix is not orthogonal, cannot be used with permutation. If this something you really want to

Re: [Freesurfer] Multiple comparison - permutation

2018-07-16 Thread Douglas N. Greve
My guess is that something is going wrong with the backgrounding. Try running it without the --bg option. You can run it with a few (eg, 100) iterations just to see if it finishes. On 07/05/2018 12:34 PM, Ting Li wrote: > > External Email - Use Caution > > Dear Freesurfer Experts, >