External Email - Use Caution Hi Douglas,
I just try your suggestion. It gives me information like the following. What does the design matrix stands for? Thanks. Ting ERROR: design matrix is not orthogonal, cannot be used with permutation. If this something you really want to do, run with --perm-force > On Jul 16, 2018, at 1:09 PM, Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > > > My guess is that something is going wrong with the backgrounding. Try > running it without the --bg option. You can run it with a few (eg, 100) > iterations just to see if it finishes. > > > On 07/05/2018 12:34 PM, Ting Li wrote: >> >> External Email - Use Caution >> >> Dear Freesurfer Experts, >> >> I am running the multiple comparison (permutation) on a MAC with the >> following code. It has taken 8 hours and has not finished yet. It >> gives me Poll jobs information without end. According to tutorial >> information, it will only take around 20 minutes. Do you know what >> should I do if I want to use this perm multiple comparison? I have >> attached my MAC system information and the Poll jobs information. >> Thanks a lot! >> >> Best wishes, >> Ting >> >> mri_glmfit-sim \ >>> --glmdir lh.volume_70_sTIV_perm.glmdir \ >>> --perm 1000 4.0 neg \ >>> --cwp 0.05\ >>> --2spaces \ >>> --bg 2 >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline > <http://www.partners.org/complianceline> . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
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