See https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MultipleComparisonsV6.0Perm?highlight=%28permutation%29
On 07/16/2018 02:15 PM, Ting Li wrote: > > External Email - Use Caution > > Hi Douglas, > > I just try your suggestion. It gives me information like the > following. What does the design matrix stands for? Thanks. > > Ting > > ERROR: design matrix is not orthogonal, cannot be used with permutation. > If this something you really want to do, run with --perm-force >> On Jul 16, 2018, at 1:09 PM, Douglas N. Greve <dgr...@mgh.harvard.edu >> <mailto:dgr...@mgh.harvard.edu>> wrote: >> >> >> My guess is that something is going wrong with the backgrounding. Try >> running it without the --bg option. You can run it with a few (eg, 100) >> iterations just to see if it finishes. >> >> >> On 07/05/2018 12:34 PM, Ting Li wrote: >>> >>> External Email - Use Caution >>> >>> Dear Freesurfer Experts, >>> >>> I am running the multiple comparison (permutation) on a MAC with the >>> following code. It has taken 8 hours and has not finished yet. It >>> gives me Poll jobs information without end. According to tutorial >>> information, it will only take around 20 minutes. Do you know what >>> should I do if I want to use this perm multiple comparison? I have >>> attached my MAC system information and the Poll jobs information. >>> Thanks a lot! >>> >>> Best wishes, >>> Ting >>> >>> mri_glmfit-sim \ >>>> --glmdir lh.volume_70_sTIV_perm.glmdir \ >>>> --perm 1000 4.0 neg \ >>>> --cwp 0.05\ >>>> --2spaces \ >>>> --bg 2 >>> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline. If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
