Monday, October 31, 2022 6:31 PM
> To: freesurfer
> Subject: [Freesurfer] About recon-all -i option
>
> External Email - Use Caution
>
> Dear All,
>
> Hi. I have a question about the -i option for "recon-all".
> According to the explanation on the fol
Yes, that should be fine
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Ryosuke Hayashi
Sent: Monday, October 31, 2022 6:31 PM
To: freesurfer
Subject: [Freesurfer] About recon-all -i option
External Email - Use Caution
Dear All,
Hi. I
External Email - Use Caution
Dear All,
Hi. I have a question about the -i option for "recon-all".
According to the explanation on the following page, the -i option specifies
DICOM and NIfTI files, but is it OK to specify a mgz file with the -i option?
https://secure-web.cisco.com
you need to give it one slice from the anatomical series. It will find
the rest.
cheers
Bruce
On Wed, 7 Mar 2012, bowan...@mail.ustc.edu.cn wrote:
> Dear all,
>I have just ran the command 'recon-all'.
> recon-all -i 3098704 -s BianYP -sd /home/wb/test/ -all
> In the parameters,3098704 is a f
Dear all,
I have just ran the command 'recon-all'.
recon-all -i 3098704 -s BianYP -sd /home/wb/test/ -all
In the parameters,3098704 is a function slice,but this parameter need a
anatomical volume.Could it can find the correct ones itself? Whether the
anatomical volume is just 3D slice or 2D
Hi,
recon-all takes an anatomical volume as input, not a functional one. You
can give it any slice that is in the correct series (just specify one) and
it will find the others.
cheers
Bruce
On Tue, 6 Mar 2012, bowan...@mail.ustc.edu.cn wrote:
> Dear all
>I just want to ask a sample quest
Dear all
I just want to ask a sample question.What's the best number of the
parameter of 'recon-all' , -i invol1 -i invol2.That is, how many slices should
we use?If the invol1 is the fist slice of the fMRI series or any one of the
data?
Yours
_
yep that's a typo. sorry!
On Apr 25, 2011, at 9:22 PM, Bruce Fischl wrote:
> yes, I think that's a typo and should be autorecon2. Perhaps Nick can
> confirm?
>
> On Mon, 25 Apr 2011,
> Xiaoying Tang wrote:
>
>> Hi All,I find the following content on the wikipage of freesurfer:
>>
>> Q. I ha
Okay, thanks!
Best,
Xiaoying
2011/4/25 Bruce Fischl
> yes, I think that's a typo and should be autorecon2. Perhaps Nick can
> confirm?
>
>
> On Mon, 25 Apr 2011, Xiaoying Tang wrote:
>
> Hi All,I find the following content on the wikipage of freesurfer:
>>
>> Q. I have already skull-stripped d
yes, I think that's a typo and should be autorecon2. Perhaps Nick can
confirm?
On Mon, 25 Apr 2011,
Xiaoying Tang wrote:
> Hi All,I find the following content on the wikipage of freesurfer:
>
> Q. I have already skull-stripped data. Can I submit it to recon-all?
>
> A: If your skull-stripped vo
Hi All,I find the following content on the wikipage of freesurfer:
Q. I have already skull-stripped data. Can I submit it to recon-all?
A: If your skull-stripped volume does not have the cerebellum, then no. If
it does, then yes, however you will have to run the data a bit differently.
First you
That flag is needed if your input is larger than the required size by
FreeSurfer 256x256x256. You would not use it on input that did not require it
(ie it is smaller than 256x256x256).
On Mar 10, 2011, at 4:53 AM, Kenichiro Tanaka wrote:
> Hello All,
>
> I have a question about recon-all co
Hello All,
I have a question about recon-all command with "-cw256" option.
What is the difference between "recon-all" and "recon-all with -cw256"?
What is "-cw256 option"?
When I tried executing recon-all command, I had an error message:
/
// ERROR! FOV=32
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