Hello list,
is there a quick way to decimate an overlay /while respecting surface
geomery)? I am looking to downsample by about a factor 100.
Alternatively, I know I can use mris_decimate to downsample a surface,
but I would have to project my highres overlays onto the downsampled
surface (w
Dear DougI'm looking for making the interhemispheric registration procedure of FS, I was just gertting familiar with it by reading the:http://surfer.nmr.mgh.harvard.edu/fswiki/XhemiI found that in the step "# Correct for MC" say that this need a new version of mri_glmfit-sim, is this version someho
Hi,
I am preprocessing my fMRI data acquired with Philips. when I using the command
'dcmunpack -src . -targ sess01 -run 101 bold nii f.nii .'
The error occurred likes below:
Found 31 total files.
Found 12 unique series: 0 101 301 401 501 601 701 801 901 1001 1101 1201
Subject xxx
Date xxx
Time
Dear Freesurfer users,
I have big issues performing recon-all into the freesurfer VirtualBox.
I dont get any error but no files are created except the 0001.mgz.
Here is what I get.
WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh!
Subject Stamp: freesurfer-Linux-centos4-stable-pub
Are those the qdec files that generate the first error? That error
implies that fsaverage is included as a subject in the qdec file. Is
this possible?
On 11/09/2015 10:38 PM, Heidi Foo wrote:
> Dear Dr Greve,
>
> Thanks for your reply. I have already linked fsaverage to my
> SUBJECTS_DIR but t
Also, try removing the blank line at the end of wmh.levels, and make
sure you have a carriage return at the end of long.qdec.table.txt. This
may fix the 2nd error
On 11/09/2015 10:38 PM, Heidi Foo wrote:
> Dear Dr Greve,
>
> Thanks for your reply. I have already linked fsaverage to my
> SUBJECT
does that file exist? Did you run recon-all -qcache ?
On 11/11/15 7:54 AM, Heidi Foo wrote:
Apologies, the error message should be /Error in analyze: couldn't
open
/Users/nnidementia/Documents/PDFS/FSVASE_002/surf/lh.thickness.fwhm10.fsaverage.mgz
or .mgh file./
On Wed, Nov 11, 2015 at 8:48
/
really? So if you run
ls -l
/Users/nnidementia/Documents/PDFS/FSVASE_002/surf/lh.thickness.fwhm10.fsaverage.mgz/
what do you get?
On 11/11/2015 07:59 PM, Heidi Foo wrote:
> Hi Dr Greve,
>
> Yes it does, for all base templates, there
> are lh(rh).long.thickness-avg(pc1, rate, and
> spc).fwhm
On 11/21/2012 05:48 AM, Gabriel Gonzalez Escamilla wrote:
> Dear Doug
>
> I'm looking for making the interhemispheric registration procedure of
> FS, I was just gertting familiar with it by reading the:
> http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi
> I found that in the step "# Correct for MC
The orientation flag was not found. This is an important piece of
infomation that should be in the header. Have these dicoms been
anonymized? Alternatively, is this may be a newer version of dicom that
we are not reading properly yet.
On 6/25/17 9:45 PM, 糜超 wrote:
Hi,
I am preprocessing my f
what is your command line? Please send the recon-all.log file
On 11/8/17 5:24 AM, aurelie ponz wrote:
Dear Freesurfer users,
I have big issues performing recon-all into the freesurfer VirtualBox.
I dont get any error but no files are created except the 0001.mgz.
Here is what I get.
WARNING: t
Thank you Douglas for your quick response !
I used the *recon-all -i ' -subjid *
Since it wasnt working I tried *recon-all -autorecon1 -i '
-subjid * and it worked for *SOME* files (including the T1) but I
don't get the hl/rl.pial files.
Then I tried the *autorecon2* on the sa;e data and it does'n
On the first one, you have to add -all, otherwise it won't do anything
On 11/8/17 11:51 AM, aurelie ponz wrote:
Thank you Douglas for your quick response !
I used the *recon-all -i ' -subjid *
Since it wasnt working I tried *recon-all -autorecon1 -i '
-subjid * and it worked for _SOME_ files
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