Re: [Freesurfer] group analysis all measures same results

2016-03-19 Thread Kaiming Yin
mri_glmfit --y rh.ad_hv.area.10.mgh --fsgd >> ad_hv.fsgd dods >> --C group_diff.mtx --surf fsaverage rh >> --cortex --glmdir >> rh.ad_hv.area.glmdir >> >> mri_glmfit-s

Re: [Freesurfer] group analysis all measures same results

2016-03-15 Thread Kaiming Yin
gh --fsgd >> ad_hv.fsgd dods >> --C group_diff.mtx --surf fsaverage rh >> --cortex --glmdir >> rh.ad_hv.area.glmdir >> >> mri_glmfit-sim --glmdir rh.ad_hv

Re: [Freesurfer] group analysis all measures same results

2016-03-15 Thread Douglas N Greve
Greve > <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>> >

Re: [Freesurfer] group analysis all measures same results

2016-03-14 Thread Douglas Greve
r.mgh.harvard.edu>> To: freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> Cc: Date: Mon, 7 Mar 2016 18:47:11 -0500 Subject: Re: [Freesurfer] group analysis all measures same results what are your command lines? On 5 March 2016 at 02:01, Kaiming Yin

Re: [Freesurfer] group analysis all measures same results

2016-03-14 Thread Kaiming Yin
all the same. > > Thanks, > Kaiming > > > -- Forwarded message -- > From: Douglas N Greve <gr...@nmr.mgh.harvard.edu> > To: freesurfer@nmr.mgh.harvard.edu > Cc: > Date: Mon, 7 Mar 2016 18:47:11 -0500 > Subject: Re: [Freesurfer] group analysis all

Re: [Freesurfer] group analysis all measures same results

2016-03-14 Thread Douglas Greve
;gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> To: freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> Cc: Date: Mon, 7 Mar 2016 18:47:11 -0500 Subject: Re: [Freesurfer] group analysis all measures same results what are your command lines? On 5 March 2016

Re: [Freesurfer] group analysis all measures same results

2016-03-14 Thread Kaiming Yin
edu> To: freesurfer@nmr.mgh.harvard.edu Cc: Date: Mon, 7 Mar 2016 18:47:11 -0500 Subject: Re: [Freesurfer] group analysis all measures same results what are your command lines? On 5 March 2016 at 02:01, Kaiming Yin <yinkaiming6...@gmail.com> wrote: > Dear guys, > > I was

Re: [Freesurfer] group analysis all measures same results

2016-03-08 Thread Kaiming Yin
Dear Douglas, Sorry for this, but could I ask how to include the previous correspondence? I just saw your responses from Freesurfer Digest, Vol 145, Issue 19, and I don't know how to do that. I use gmail. Best, Kaiming On Tue, Mar 8, 2016 at 10:50 PM, Douglas N Greve

Re: [Freesurfer] group analysis all measures same results

2016-03-08 Thread Kaiming Yin
Dear Douglas, My command lines were, e.g. right thickness and right white surface (using the same ad_hv.fsgd and group_diff.mtx files in the command lines): ad_hv.fsgd GroupDescriptorFile 1 Title AD_HV_GroupAnalysis Class AD Class HV Input AD_003 AD Input AD_005 AD ... Input HV_AB HV Input

Re: [Freesurfer] group analysis all measures same results

2016-03-07 Thread Douglas N Greve
what are your command lines? On 03/04/2016 09:01 PM, Kaiming Yin wrote: > Dear guys, > > I was doing group analysis (command-line) on two groups (patients and > control, no age or other information). The data has been "qcached", > and after following the three steps as "mris_preproc, mri_glmfit

[Freesurfer] group analysis all measures same results

2016-03-04 Thread Kaiming Yin
Dear guys, I was doing group analysis (command-line) on two groups (patients and control, no age or other information). The data has been "qcached", and after following the three steps as "mris_preproc, mri_glmfit and mri_glmfit-sim" shown in the tutorial on the Freesurfer website, I obtained the