Re: [Freesurfer] help troubleshooting lta_convert error

2022-07-12 Thread fsbuild
External Email - Use Caution Hello Megan, The errors you list below usually result from running a version of Freesurfer that does not match the operating system you are using, i.e., it looks like you are trying to run the version built for Ubuntu linux, 7.2.0

[Freesurfer] help troubleshooting lta_convert error

2022-07-01 Thread Megan Schendel
External Email - Use Caution Hi all, I had a working distribution on an old system a few weeks ago, but now I'm getting an error. Can anyone offer any troubleshooting ideas? I am working on a shared server with a freesurfer distribution that I own. Here is some system info:

Re: [Freesurfer] Help for dmri_pathstats error

2017-07-14 Thread Yuwen Hung
Dear DTI Experts: I wonder if there is anyone that might know a direction to look into this error? I just need to know what program generates this "path.map.txt" for the tracula script dmri_pathstats to run through. dmri_pathstats --intrc START_610/dpath/lh.cst_AS_avg33_mni_bbr --dtbase

Re: [Freesurfer] Help with QDEC error

2013-06-25 Thread Manish Dalwani
Cc: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Sent: Monday, June 24, 2013 1:01 PM Subject: Re: [Freesurfer] Help with QDEC error Hi Nick and Doug,  Can you suggest an alternative way if QDEC is unable to handle a single group?   I would like to run these analyses to address

Re: [Freesurfer] Help with QDEC error

2013-06-24 Thread Manish Dalwani
...@yahoo.com Cc: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Sent: Thursday, June 20, 2013 11:16 PM Subject: Re: [Freesurfer] Help with QDEC error I thought it would have worked with a single group. Maybe Nick knows of the top of his head. doug On 6/20/13 12:36 PM

Re: [Freesurfer] Help with QDEC error

2013-06-20 Thread Manish Dalwani
: Manish Dalwani manishdalw...@yahoo.com To: Douglas Greve gr...@nmr.mgh.harvard.edu; freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Sent: Thursday, June 20, 2013 1:26 PM Subject: Re: [Freesurfer] Help with QDEC error Hi Doug,  I was out of town for a conference. Please see my

Re: [Freesurfer] Help with QDEC error

2013-06-20 Thread Douglas Greve
@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu *Sent:* Thursday, June 20, 2013 1:26 PM *Subject:* Re: [Freesurfer] Help with QDEC error Hi Doug, I was out of town for a conference. Please see my attachments. I have the log file and screenshots of ill-matrix conditioning. Thanks for your help! Manish

Re: [Freesurfer] Help with QDEC error

2013-06-15 Thread Douglas Greve
Can you send the mri_glmfit.log file from /Applications/freesurfer/subjects/qdec/Untitled ? doug On 6/14/13 4:57 PM, Manish Dalwani wrote: Hello Freesurfers, I am trying to run regression analyses within patients and one variable of interest which adjusting for the nuisance variables age,

[Freesurfer] Help with QDEC error

2013-06-14 Thread Manish Dalwani
Hello Freesurfers,  I am trying to run regression analyses within patients and one variable of interest which adjusting for the nuisance variables age, IQ, thickness. When i select the group and the CD (variable of interest) and run analyses (DODS), I get the following error:  Qdec 1.4

[Freesurfer] help with this error

2013-06-03 Thread Manish Dalwani
Dear Freesurfer's I have been using (a slightly older version) Freesurfer on linux and it works fine. I just recently installed freesurfer on the mac workstation OS X 10.8.1. I get the following error: server:subjects manishdalwani$ cd anat_5214 server:anat_5214 manishdalwani$ recon-all -i

Re: [Freesurfer] help with this error

2013-06-03 Thread Douglas N Greve
It looks like you don't have permissions to that file. Try changing the permission with chmod (need to change them for all your dicom files) doug On 06/03/2013 06:17 PM, Manish Dalwani wrote: Dear Freesurfer's I have been using (a slightly older version) Freesurfer on linux and it works

[Freesurfer] HELP: recon-all error

2011-04-28 Thread Yunjo Lee
Hi all, I sent an email a couple of days ago but didn't get any answer yet... I recently installed FreeSurfer in a virtual machine (Ubuntu). I installed it according to the freesurfer website and another source. http://mirko.windhoff.net/how_to/install_freesurfer_on_ubuntu When I ran

Re: [Freesurfer] HELP: recon-all error

2011-04-28 Thread Bruce Fischl
do you have permission to write to that directory? Is the partition full? On Thu, 28 Apr 2011, Yunjo Lee wrote: Hi all, I sent an email a couple of days ago but didn't get any answer yet... I recently installed FreeSurfer in a virtual machine (Ubuntu). I installed it according to the

[Freesurfer] help with freesurfer error

2008-02-28 Thread joel bruss
) Linux dendrite 2.6.22.16-0.1-default #1 SMP 2008/01/23 14:28:52 UTC i686 i686 i386 GNU/Linux recon-all exited with ERRORS at Thu Feb 28 16:34:58 CST 2008 I don't speak FreeSurfer and don't understand this error. Please help. -Joel ___ Freesurfer

Re: [Freesurfer] help with freesurfer error

2008-02-28 Thread Nick Schmansky
dendrite 2.6.22.16-0.1-default #1 SMP 2008/01/23 14:28:52 UTC i686 i686 i386 GNU/Linux recon-all exited with ERRORS at Thu Feb 28 16:34:58 CST 2008 I don't speak FreeSurfer and don't understand this error. Please help. -Joel ___ Freesurfer