Hi Matthias
Have you considered "Data Libraries"?
A cron job can query your LIMS and use the API to create "Data
Libraries". Then the user can select which datasets she/he wants to import.
And back to your original question: Yes, it is possible to create
interactive tools. Check out the
Hi Hans-Rudolf
Yes, we have considered using data libraries, but for this particular use case
we would prefer an approach like this. Our users are notoriously bad at data
management and we would like to limit the amount of data that gets loaded in
Galaxy. The networked share does not store all
I have created a Trello card to track this request here
https://trello.com/c/qCtBBB8n.
Any chance you can share the tool with me? I understand that this
instinct is too simplistic - but it seems to me like the option to
repeatedly run a tool over many datasets should not be the concern of
the
Thanks Peter. I see how this feature would be useful, but the program I'm
writing a wrapper for has an argument with values corresponding to the
input files. I am using a repeat tag to maintain this order. With the
multi-run option, files are selected in a random manner and added to the
job queue.
Hi all,
I am trying to create a select box with the possibility of selecting only a
single item from the input dataset (figure 1). This works fine but the
option for selecting multiple files is still visible (figure 2). The
multiple=false attribute has no effect.
Figure:
I think this is the (relatively new) Galaxy ability to automatically
run N copies of your tool given N input files, making N outputs
and is related to the collections work.
(This is possible if your tool takes a single input file)
Peter
On Tue, Jan 20, 2015 at 6:17 PM, Vimalkumar Velayudhan
Hi Marco,
No problem - I originally copied the metadata access
trick from one of the Galaxy dev-team's tool anyway.
Maybe we need to add this to the wiki...
Peter
On Tuesday, January 13, 2015, Marco Albuquerque
marcoalbuquerque@gmail.com wrote:
Hi Peter,
I was unaware of how to access
Hello Galaxy,
I'm currently working on adding some tools and am having an issue with
DELLY.
So, I am under the impression that BAM indexing happens automatically when a
BAM is uploaded. However there is no associated dataset_i.dat.bai file in
the file location in my local instance of galaxy.
