[HCP-Users] MMP parcellation for 7T

Dear HCP experts, Is there a dlabel.nii file containing 180 MMP ROIs per hemisphere for 7T data release? I can find the file for 3T release in BALSA (Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Colors.32k_fs_LR.dlabel.nii) but I could not find the similar file for 7T? Regards, Kamal

[HCP-Users] MMP parcellation for 7T

Dear HCP Experts, Is there a dlabel.nii file containing 180 MMP ROIs per hemisphere for 7T data release? I can find the file for 3T release in BALSA (Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Colors.32k_fs_LR.dlabel.nii) but I could not find the similar file for 7T? Thanks in advance,

[HCP-Users] BedpostX for 7T Diffusion data

Dear HCP experts, Is bedpostx data available for 7T dMRI scans? Regards, Kamal ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users

[HCP-Users] Structural connectivity matrix

Hello HCP experts, Is there any structural connectivity matrix available for HCP subjects on the MMP parcellation? Regards, Kamal ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] wbsparse

edu<mailto:tsc...@mst.edu>> Date: Wednesday, February 28, 2018 at 6:56 PM To: "Glasser, Matthew" <glass...@wustl.edu<mailto:glass...@wustl.edu>> Cc: "Shadi, Kamal" <kamal.shad...@gatech.edu<mailto:kamal.shad...@gatech.edu>>, "hcp-users@humanconn

Re: [HCP-Users] wbsparse

Yes, It’s in https://balsa.wustl.edu/study/show/W336. From: "Glasser, Matthew" <glass...@wustl.edu<mailto:glass...@wustl.edu>> Date: Wednesday, February 28, 2018 at 5:28 PM To: "Shadi, Kamal" <kamal.shad...@gatech.edu<mailto:kamal.shad...@gatech.edu>>

[HCP-Users] pconn cifti files in ASCII

Hi all, Is there anyway I can get the pconn cifti files in ASCII format? Thanks, Kamal ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users

[HCP-Users] border file

Hi All, It seems that each vertex in the border files has an associated weight. What is this weight? If I want to draw a border vertex by vertex, how should I use the weights? Thanks, Kamal ___ HCP-Users mailing list HCP-Users@humanconnectome.org

[HCP-Users] gif surface to obj

Hi all, Does human connectome workbench have a tool to convert gii surfaces to obj? Thanks, Kamal ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users

[HCP-Users] physical adjacency of MMP1.0 ROIs

Hi all, How can I test if two MMP1.0 ROIs are physically adjacent? Is there a way to do this by web_command? Thanks, Kamal ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] FNIRT for HCP diffusion data

t;> Date: Wednesday, November 2, 2016 at 2:30 PM To: "Shadi, Kamal" <kamal.shad...@gatech.edu<mailto:kamal.shad...@gatech.edu>>, "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconn

Re: [HCP-Users] FNIRT for HCP diffusion data

Hi Matt., Yes, It is an HCP subject. Thanks, Kamal From: "Glasser, Matthew" <glass...@wustl.edu<mailto:glass...@wustl.edu>> Date: Tuesday, November 1, 2016 at 7:25 PM To: "Shadi, Kamal" <kamal.shad...@gatech.edu<mailto:kamal.shad...@gatech.edu>>, &qu

[HCP-Users] FNIRT for HCP diffusion data

Hi all, I am trying to run probtrackx using HCP preprocessed diffusion data and MMP1.0 ROIs. To my understanding the corresponding T1w image of MMP1.0 ROIs is: HCP_PhaseTwo / Q1-Q6_RelatedParcellation210 / MNINonLinear / Q1-Q6_RelatedParcellation210_AverageT1w_restore.nii.gz Is this a right

Re: [HCP-Users] Problem loading a single surface ROI with wb_view

Hi Tim, Is this type of file OK though for seeding in FSL probtrackx? Many thanks for your response, Kamal. From: Timothy Coalson <tsc...@mst.edu<mailto:tsc...@mst.edu>> Date: Thursday, October 27, 2016 at 2:35 PM To: "Shadi, Kamal" <kamal.shad...@gatech.edu<mai

[HCP-Users] MMP1.0 surface label ROIs in a subject T1w space

Hi all, I need to see the MMP1.0 ROIs in volume format on subject T1w native space. I am using following command to convert surface ROIs to volume ROIs in a subject T1w space: wb_command -label-to-volume-mapping -nearest-vertex x I use following arguments: =

[HCP-Users] Physiological Signals,

Hi everybody, I am trying to remove physiological noise using RETROICOR and data provided on rfMRI_REST1_LR_Physio_log.txt files for each subject. According to HCP tutorial the second column in these files corresponds to cardiac signal(pulse oximetry). If I plot the column, simple visual