Re: [Jmol-users] final testing appreciated

2008-09-29 Thread Angel Herraez
I've added some information about clearing Java cache and other Java- related stuff into the Wiki: main page > Running Jmol > Solving Java Problems Also linked from Running Jmol Application and Running Jmol Applet Any confirmation or correction of that info from the Mac or Linux users will be we

Re: [Jmol-users] Jmol 11.6 last days before release

2008-09-29 Thread Egon Willighagen
On Sat, Sep 27, 2008 at 6:33 PM, Robert Hanson <[EMAIL PROTECTED]> wrote: > I'm hoping we can release 11.6 Wednesday. Please finish all translations and > notify me of bugs before then. Translated applet and app into NL. Quite a few textual changes... Egon -- http://chem-bla-ics.blogspot.c

Re: [Jmol-users] final testing appreciated

2008-09-29 Thread Rolf Huehne
Robert Hanson wrote: > Final testing appreciated for Jmol 11.6. Anything you can do to try to break > it would be great. > > One bug I know about seems to be that the applet stalls if a file load error > occurs. I'm onto that one. > I tried to use the signed applet but when I try to load a file

Re: [Jmol-users] final testing appreciated

2008-09-29 Thread Robert Hanson
Hmm. This could be a mix of signed applet versions. Try using jmolInitialize(".","JmolAppletSigned.jar") so that it is definitely picking up just the one JAR file. I'll try jmolInitialize(".","JmolAppletSigned0.jar") and see if I forgot to include something in one of the Jar files. Could be --

Re: [Jmol-users] final testing appreciated

2008-09-29 Thread Rolf Huehne
Robert Hanson wrote: > Hmm. This could be a mix of signed applet versions. Try using > > jmolInitialize(".","JmolAppletSigned.jar") > > so that it is definitely picking up just the one JAR file. > > I'll try > > jmolInitialize(".","JmolAppletSigned0.jar") > > and see if I forgot to include som

Re: [Jmol-users] Jmol 11.6 last days before release

2008-09-29 Thread Nicolas Vervelle
I have updated the .po files on Sourceforge and also started the update on launchpad (should be updated in a few hours, time for launchpad to take the files into account) Nico Current status : update-application-catalog: check-uptodate-application-catalog: update-application-catalog-lang: [e

[Jmol-users] volume of cavities inside proteins?

2008-09-29 Thread Jennifer L. Muzyka
I just showed some of the capabilities of Jmol in group meeting for the group where I'm doing my sabbatical. There was a lot of interest in the features of Jmol, so I have a couple of questions. The first one is whether it would be possible for Jmol to calculate and display volumes of the cavi

Re: [Jmol-users] volume of cavities inside proteins?

2008-09-29 Thread Robert Hanson
Hi, Jennifer. Sounds like you are having a wonderful sabbatical. (Where?) The cavities are totally created within Jmol. No additional program. Cavity volume. This is a very challenging concept. I have not attempted to do this in Jmol because I am told that you really have to do it right to have i