RE: Yosemite Manifesto on RDF as a Universal Healthcare Exchange Language

Hi This looks like nice work. Any publications from your group on it? What are the use cases that motivated it? A challenge is that many of the field values in DICOM, being strings, lack explicit semantics.. Daniel Rubin > -Original Message- > From: Michael Brunnbauer [mail

RE: Stanford-bound!

Congrats Michel! Look forward to potential collaborations on the imaging/semantics front... Daniel ___ Daniel L. Rubin, MD, MS Assistant Professor of Radiology and Medicine (Biomedical Informatics) Department of Radiology | St

RE: HCLS SciDiscourse call Monday April 2, 2012, 10am EDT: Matt Gamble on MIMV, the Minimum Information Model Vocabulary

Hi I get a message saying the file is damaged.. Daniel ___ Daniel L. Rubin, MD, MS Assistant Professor of Radiology and Medicine (Biomedical Informatics) Department of Radiology | Stanford University Richard M. Lucas Center | 1

RE: Bio2RDF meeting

That's a most unfortunate time. There's no way people (without insomnia) from the Pacific zone will be joining this call.. ___ Daniel L. Rubin, MD, MS Assistant Professor of Radiology and Medicine (Biomedical Informatics) Departme

RE: You've been invited to "TERM call"

s Narciso Albarracin <mailto:nalbarra...@gmail.com%0d%0a%09%09%20%20%20%20%20%20%20%20%20%20%20%2 0%20%20%20%20%20%20%20%20%09%09%09%09> , Dave Hau <mailto:ha...@mail.nih.gov%0d%0a%09%09%20%20%20%20%20%20%20%20%20%20%20%20%2 0%20%20%20%20%20%20%20%09%09%09%09> , Mary Kennedy <

RE: TERM Teleconference this coming MONDAY

FYI, I'll be traveling and will miss this call and the one next week. Daniel ___ Daniel L. Rubin, MD, MS Description: Description: Description: Description: cid:image001.jpg@01CB4E1D.AC3DA3D0 Assistant Professor

RE: HCLS Terminology call this coming MONDAY, 12:00 noon U.S. Eastern time

FYI, due to travel I'll miss this call. Daniel ___ Daniel L. Rubin, MD, MS Description: Description: Description: Description: cid:image001.jpg@01CB4E1D.AC3DA3D0 Assistant Professor Department of Radiology

RE: best practice relation for linking to image/machine-opaque docs? biomedical use case

: 650-723-9495 | Fax: 650-723-5795 Web: <http://rubin.web.stanford.edu/> http://rubin.web.stanford.edu/ From: Paolo Ciccarese [mailto:paolo.ciccar...@gmail.com] Sent: Monday, January 10, 2011 12:57 PM To: Daniel Rubin Cc: Tim Clark; M. Scott Marshall; HCLS IG; public-...@

RE: best practice relation for linking to image/machine-opaque docs? biomedical use case

x: 650-723-5795 Web: http://rubin.web.stanford.edu/ > -Original Message- > From: Tim Clark [mailto:tim_cl...@harvard.edu] > Sent: Monday, January 10, 2011 11:35 AM > To: M. Scott Marshall > Cc: HCLS IG; public-...@w3.org; Daniel Rubin; John F. Madden; Vasiliy

RE: No BioRDF telcon today & European time change

Hi all, Great call today. Scott, perhaps you could explore possibility of our collaborating with the Iceland people on a brain glioma project.. Daniel ___ Daniel L. Rubin, MD, MS Assistant Professor Department

RE: HCLS Terminology call this coming MONDAY, 12:00 noon U.S. Eastern time

Hi, I'm out of town on Mon and will miss the call. Daniel ----- Daniel Rubin, MD, MS Assistant Professor, Department of Radiology Stanford University Richard M. Lucas Center 1201 Welch Road, Office P285 Stanford, CA 94305-5488 Phone: 650-725-4936 Fax:

Re: HCLS Terminology call this coming MONDAY, 12:00 noon U.S. Eastern time

Hi I'm traveling today so will miss the call Daniel --- Sent from my iPhone ••Please excuse typos•• Daniel L. Rubin, MD Assistant Professor of Radiology Richard M. Lucas Center 1201 Welch Road, Office P285 Stanford, CA, 94305-5488 Phone: (650) 725-5693 Fax: (650) 723-5795 Email: dlru...@stanfor

RE: Minutes for Terminology call

? Daniel - Daniel Rubin, MD, MS Assistant Professor, Department of Radiology Stanford University Richard M. Lucas Center 1201 Welch Road, Office P285 Stanford, CA 94305-5488 Phone: 650-725-4936  Fax: (650) 723-5795 http://rubin.web.stanford.edu/ > -Origi

RE: Minutes for Terminology call

Great. Can we get more info about "A-tags"? Daniel ----- Daniel Rubin, MD, MS Assistant Professor, Department of Radiology Stanford University Richard M. Lucas Center 1201 Welch Road, Office P285 Stanford, CA 94305-5488 Phone: 650-725-4936  Fax: (650

Re: An argument for bridging information models and ontologies at the syntactic level

FYI--this is exactly the approach we take in the caBIG AIM project (semantic Annotation and Image Markup) wherein we have a domain ontology containing the biomedical entities, and an information model specifying the information you can capture when making statements about the images. Daniel At 1

Re: Mammographic ontology

FYI--the American College of Radiology created the BI-RADS terminology precisely for the purposes of providing a controlled lexicon for radiology observations on mammography. Extensions on this are needed to describe findings in ultrasound and MRI (future work in BI-RADS). There is a possibil

Re: Surveillance Epidemiology and End Results (SEER)

be great if you were able to write a brief description of the data set, list the terms that are used, and also provide some information as to how the data is currently used. Would it be realistic for either of you to get that done by Monday? Cheers, Susie On 10/4/07, *Daniel Rubin* <[EM

Re: Surveillance Epidemiology and End Results (SEER)

I might be able to help look as some of these data, depending on what specifically is expected for this task. Regards, Daniel ___ Daniel Rubin, MD, MS Clinical Asst. Professor, Radiology Research Scientist, Stanford Medical Informatics Scientific Director, National Center of Biomedical

Re: [BIONT-DSE] Inclusion versus exclusion criteria

... Likewise, making any generalized statements about when open- and closed-world reasoning are appropriate in health care is dangerous--one must be very specific about the context and specific case to assess whether the assumption is valid. __ Daniel Rubin, MD, MS Clinical Asst. Professor, Radiology

Re: 303 +1, WSDL -1

similar) entities in different ontologies (a problem we already face since the NCBO ontologies overlap in content). We will be approaching this problem by hosting mappings among ontologies. Daniel ___ Daniel Rubin, MD, MS Clinical Asst. Professor, Radiology Research Scientist, Stanford Medical

Semantic Web in Ubiquitous Healthcare Workshop

-- CALL FOR PAPERS -- The ISWC Workshop on Semantic Web in Ubiquitous Healthcare (SemUbiCar

Re: Any takers for reviewing and presenting to group evaluation of open source drug database?

I might be able to help. But I don't seem able to access the URL you provide. Regards, Daniel ___ Daniel Rubin, MD, MS Clinical Asst. Professor, Radiology Research Scientist, Stanford Medical Informatics Scientific Director, National Center of Biomedical Ontology MSOB X-215 Stanford, CA

Re: Evidence

At 07:15 AM 6/11/2007, Matt Williams wrote: I changed the subject line to make it more specific. I think that Evidence is a tricky, slippery subject. It seems to be both traces (i.e. records of something) and in many cases, inferences. Those inferences probably shouldn't be called evidence,

RE: Reviewing the Banff demo ontology infrastructure

At 09:43 PM 6/10/2007, Kashyap, Vipul wrote: Matthias, Thanks for the well organized e-mail, This is clearly one area where the HCLSIG community can provide some feedback. Chimezie had similar constructs related to "Patient Records" in his POMR. Let's try to distill out some issues so that

SKOS use cases

Request for Comments: SKOS Use Cases and Requirements: Working Draft   2007-05-16: The Semantic Web Deployment Working Group has   published the First Public Working Draft of SKOS Use Cases and   Requirements [1]. Knowledge organization systems, such as taxonomies,   thesauri or subject heading

New language for Terms of Use on BioPortal

very much, Daniel ___ Daniel Rubin, MD, MS Clinical Asst. Professor, Radiology Research Scientist, Stanford Medical Informatics Scientific Director, National Center of Biomedical Ontology MSOB X-215 Stanford, CA 94305 650-725-5693

RE: Answers to questions about BioPortal

ht answers; to get ahead you need the right questions ---John Browning and Spencer Reiss, Wired 6.04.95 From: [EMAIL PROTECTED] [ mailto:[EMAIL PROTECTED]] On Behalf Of Daniel Rubin Sent: Wednesday, January 17, 2007 10:26 AM To: [EMAIL PROTECTED] Cc: w3c semweb hcls; [EMAIL PROTECTED] Subje

Re: Answers to questions about BioPortal

aniel ___ Daniel Rubin, MD, MS Clinical Asst. Professor, Radiology Research Scientist, Stanford Medical Informatics Scientific Director, National Center of Biomedical Ontology MSOB X-215 Stanford, CA 94305 650-725-5693 At 02:03 AM 1/17/2007, [EMAIL PROTECTED] wrote: I don't know if any commercial clini

Re: Answers to questions about BioPortal

_ Dr. Dirk Colaert MD Advanced Clinical Application Research Manager Agfa Healthcare   mobile: +32 497 470 871 Daniel Rubin <[EMAIL PROTECTED]> Sent by: [EMAIL PROTECTED] 10/01/2007 01:46 To "w3c semweb hcls" cc Subject Answers to questions about BioPortal

RE: Answers to questions about BioPortal

On the format of URI (slash vs hash), it would be worth hearing from the as much of the W3C community as possible, as there could be differences of opinion. At this point, we are collecting the requirements. In terms of synchronization, BioPortal will serve up the "current version" as defined

Answers to questions about BioPortal

LexGrid provides this functionality. 4. Are you [Mark Musen] the person to request updates of information currently displayed on the site? You can contact Daniel Rubin. 5. The terms of service says: "Except as expressly prohibited on the Site, you are permitted to view, copy, print and distr

Re: request of the repository location for hosting *RDF, *OWL, *N3 files possibly at W3C server

Hi Eric, Yes, our plan will be to provide URIs for referencing all content. We hope to have that available soon. In addition, we are also working on exposing as Web services the functions available through the BioPortal GUI. Let us know if you have any other questions or feedback on requirements

Re: BioPortal

Hi Trish, You can contact me regarding questions about this. BioPortal provides an ontology library containing the different release versions of ontologies, as submitted to us by the content owners, but is not a content management system such as cvs. Different ontology developers will use the

Re: 11 Dec 07 Bio-RDF con call minutes available

Hi Suzi, Unfortunately, on that date I have a conflicting call that begins at 11:30 Eastern. I could try joining at 11am Eastern, but will have to drop off the call early. Regards, Daniel ___ Daniel Rubin, MD, MS Clinical Asst. Professor, Radiology Research Scientist, Stanford Medical

Re: 11 Dec 07 Bio-RDF con call minutes available

Hello, I see from the minutes that the possibility for semantic description in imaging was discussed. I hope this might be discussed on a future call, as it is an area of particular interest to me. Regards, Daniel ___ Daniel Rubin, MD, MS Clinical Asst. Professor, Radiology Research

Re: [HCLS-ACPP] Tcon Today, Nov. 1, 3:00-4:00pm ET (20:00-21:00 UTC)

Hi Helen I'm trying to join the tcon but the passcode is not valid. Thanks Daniel At 08:56 AM 11/1/2006, [EMAIL PROTECTED] wrote: Please join our weekly Tcon on every Wednesday, 3-4pm EDT. SW_HCLS(APP) Wednesdays 3:00pm-4:00pm et / 2000-2115 UTC Zakim Bridge +1.617.761.6200, conference 2277

Re: Introduction

Mark, Have you just getting started to build your OWL/RDF models of Ischemic Heart Disease, or have you already done something in this area? I'd be interested in seeing your ontologies. Best regards, Daniel At 09:25 AM 2/10/2006, Mark Wilkinson wrote: Greetings all! I'm Mark Wilkinson, A

Re: HL7 and patient records in RDF/OWL?

This sounds intriguing. Do you have any owl ontologies you can share? Daniel At 08:36 PM 2/8/2006, John Madden wrote: Dan, This is also a big interest of mine. I'm co-chairing the HL7 Anatomic Pathology SIG (and I'm in HCLS courtesy SNOMED). With SNOMED's support, I'm embarking on OWL-izing