[PyMOL] sony (sgi) monitorGDM-20D11 flashing LEDs, no picture

2004-09-02 Thread Dr. Daniel James White PhD
Hi there, Just on the off chance that someone might know... We have a sgi indigo2 that is working, but the monitor seems to have a problem its a sony (sgi) GDM-20D11 There is no picture when it is turned on, and the green and amber LEDs next to each other on the bottom right of the monit

Re: [PyMOL] running APBS plugin on macG5

2004-09-02 Thread Michael George Lerner
Hi, I don't have a Mac, so I can't really help you here .. I know there are quite a few people on the PyMOL list who've gotten APBS to work on Macs, though, so maybe one of them will chime in. If you don't get help here, you can probably get some more advice on the APBS mailing list. In case you

Re: [PyMOL] running APBS plugin on macG5

2004-09-02 Thread Alex W. Smith
Michael: I followed the directions for installing from source and used Bill Scott's tweak (both links below). Everything seems to be running fine. I am a bit short of memory using my Al G4PB, but everything configured and complied with no problems. I have only used APBS with the Pymol plug

[PyMOL] help compiling/ running APBS plugin on macG5

2004-09-02 Thread Ann Mullin
I have X11 and developer tools. I can get maloc installed, but when I configure apbs, I get: checking build system type... powerpc-apple-darwin7.5.0 checking host system type... powerpc-apple-darwin7.5.0 ... ... checking if Fortran 77 compiler accepts -nofor_main... no checking how f77 mangles f

Re: [PyMOL] help compiling/ running APBS plugin on macG5

2004-09-02 Thread Michael George Lerner
> I also notice that the same place that has APBS has this site that > computes electrostatics from a PDB file and returns a PQR file. This > would be lovely for people like me to use for the calculations. Now > how can I use the PQR file to create an electrostatic surface with > pymol? A PQR fi

Re: [PyMOL] installing APBS on PBG4

2004-09-02 Thread Michael Bovee
On Sep 2, 2004, at 2:03 PM, Alex W. Smith wrote: Michael: I followed the directions for installing from source and used Bill Scott's tweak (both links below). Everything seems to be running fine. I am a bit short of memory using my Al G4PB, but everything configured and complied with no prob

Re: [PyMOL] installing APBS on PBG4

2004-09-02 Thread Luca Jovine
/usr/bin/ld: Undefined symbols: restFP saveFP collect2: ld returned 1 exit status Hi Michael, these symbols are in: /usr/lib/libgcc.a try linking with -lgcc ! -Luca Luca Jovine, Ph.D. Brookdale Department of Molecular,