Re: [PyMOL] APBS plug in (2.1) with PyMOL v1.7

what version of OS X you are using, but the apbs binary included with MacPyMOL doesn't run on versions prior to 10.8. It's relatively straightforward to compile APBS from source and replace the binary in the app bundle. It's at pymol/ext/bin/apbs. -ben -- | Ben Eisenbraun | SBGrid Consortium

Re: [PyMOL] Shader issues and automatic disabling (was Re: I just built pymol, comes up but hangs on any attempt...)

, loading from memory. CShaderPrg_Link-Error: Shader program failed to link name='default'; GL_MAX_VARYING_FLOATS=60 log follows. CShaderPrg_New-Error: vertex shader compilation failed name='volume'; log follows. Thanks for your assistance. -ben -- | Ben Eisenbraun | SBGrid Consortium

[PyMOL] Shader issues and automatic disabling (was Re: I just built pymol, comes up but hangs on any attempt...)

: GL_VENDOR: NVIDIA Corporation GL_RENDERER: Quadro 4000/PCIe/SSE2 GL_VERSION: 2.1.2 NVIDIA 304.37 Adapting to Quadro hardware. Detected 24 CPU cores. Enabled multithreaded rendering. -ben -- | Ben Eisenbraun | SBGrid Consortium | http://sbgrid.org | | Harvard

Re: [PyMOL] Shader issues and automatic disabling (was Re: I just built pymol, comes up but hangs on any attempt...)

-- | Ben Eisenbraun | SBGrid Consortium | http://sbgrid.org | | Harvard Medical School | http://hms.harvard.edu | -- Don't let slow site performance ruin your business

Re: [PyMOL] Shader issues and automatic disabling (was Re: I just built pymol, comes up but hangs on any attempt...)

is hosted on NFS and automounted to/from the same location, so in theory no matter which side is trying the fopen (or whatever), it should be able to find the file on disk at the same path. Thanks for your help. -ben -- | Ben Eisenbraun | SBGrid Consortium | http://sbgrid.org

Re: [PyMOL] Virtual machines and graphics cards

-- | Ben Eisenbraun | SBGrid Consortium | http://sbgrid.org | | Harvard Medical School | http://hms.harvard.edu | -- WhatsUp Gold - Download Free Network Management Software

[PyMOL] MacPyMOL 1.4 on OS X 10.5.8 load command error

. It looks like you'll have to experiment a bit if you want to continue to support 10.5 users. -ben -- | Ben Eisenbraun | SBGrid Consortium | http://sbgrid.org | | Harvard Medical School | http://hms.harvard.edu

[PyMOL] loading plugins from user home directories

to figure it out, but I'm curious what Jason et al think of the idea, since I don't really want to maintain a separate patch to enable this functionality. Thoughts, Jason, et al? :-) -b -- | Ben Eisenbraun | Software Sysadmin | | Structural Biology Grid

Re: [PyMOL] loading plugins from user home directories

On Fri, Jul 16, 2010 at 05:21:44PM -0400, Ben Eisenbraun wrote: I've been poking through modules/pmg_tk/PMGApp.py, and I easily modified it to support installing/deleting plugins to the user's directory, but my python-fu is weak, and I can't seem to figure out how to modify

[PyMOL] stereo issue on OS X 10.6.3 with PyMOL 1.2r3

to grab a screenshot, the image comes out without the artifacts, so it's like the screen is not refreshing properly? The other odd thing is that stereo in CCP4mg works fine. Any ideas on how to proceed? Thanks. -ben -- | Ben Eisenbraun | Software Sysadmin

[PyMOL] DISPLAY issue on OS X 10.5 with PyMOLX11Hybrid 1.1r1

and can see some references to DISPLAY being set, but haven't read the code closely enough to see if there is some failing test that is the culprit here. -ben -- | Ben Eisenbraun | Software Gunky | | Structural Biology Grid | http://sbgrid.org

Re: [PyMOL] Command line mode on OS X 10.4 vs 10.5

into the console. Is it supposed to? Thanks. -ben -- Ben Eisenbraun Structural Biology Grid Harvard Medical School http://sbgrid.org http://hms.harvard.edu

Re: [PyMOL] Command line mode on OS X 10.4 vs 10.5

connection to the WindowServer, _CGSDefaultConnection() is NULL. -ben -- Ben Eisenbraun Structural Biology Grid Harvard Medical School http://sbgrid.org http://hms.harvard.edu

Re: [PyMOL] Command line mode on OS X 10.4 vs 10.5

by David. That ticket was from February 2005, so this was almost 4 years ago now. I'll install the 1.2 betas and try them out. Thanks for your help. -ben -- Ben Eisenbraun Structural Biology Grid Harvard Medical School http://sbgrid.org http

[PyMOL] Command line mode on OS X 10.4 vs 10.5

CGSWindow 2009-01-21 13:31:53.280 MacPyMOL[38070:807] *** Terminating app due to uncaught exception 'NSInternalInconsistencyException', reason: 'Error (1002) creating CGSWindow' Is this a known issue? Is there a different switch that has to be passed for 10.5? Thanks. -ben -- Ben Eisenbraun

[PyMOL] adding python modules for MacPyMOL

multiarray: This Python has API version 1012, module multiarray has version 1013. I poked around in the PyMOLX11Hybrid.app directories, but didn't see an obvious place I could add a module installation. Thanks. -ben -- Ben Eisenbraun Structural Biology Grid Harvard Medical