Re: [R] Warning message: In length(barlist) == 1 && as.character(barlist[[1]][[2]]) == "1"

2023-04-21 Thread Ivan Krylov
On Thu, 20 Apr 2023 10:11:03 +0200 Giozz Lau wrote: > I am writing to seek assistance regarding a warning message that I > encountered while running a CLMM with two main factors and one random > factor ("participants"). One of the main factors consists of six > levels that can be either

[R] Warning message: In length(barlist) == 1 && as.character(barlist[[1]][[2]]) == "1"

2023-04-21 Thread Giozz Lau
Hello, I am writing to seek assistance regarding a warning message that I encountered while running a CLMM with two main factors and one random factor ("participants"). One of the main factors consists of six levels that can be either categorical or numerical. As this is my first time running

Re: [R] Warning message: NAs introduced by coercion

2019-01-09 Thread David L Carlson
-project.org Subject: Re: [R] Warning message: NAs introduced by coercion Yes, sorry. I attached the file once again. Well, still getting the same warning. > class(genod) <- "numeric" Warning message: In class(genod) <- "numeric" : NAs introduced by coercion > class(

Re: [R] Warning message: NAs introduced by coercion

2019-01-09 Thread PIKAL Petr
And as you use bioconductor related package you probably could get better answers in specialised biconductor help https://www.bioconductor.org/help/ Cheers Petr From: N Meriam Sent: Tuesday, January 8, 2019 4:36 PM To: PIKAL Petr Cc: r-help@r-project.org Subject: Re: [R] Warning message: NAs

Re: [R] Warning message: NAs introduced by coercion

2019-01-09 Thread PIKAL Petr
From: N Meriam Sent: Tuesday, January 8, 2019 4:36 PM To: PIKAL Petr Cc: r-help@r-project.org Subject: Re: [R] Warning message: NAs introduced by coercion I see... Here's a portion of what my data looks like (csv file attached). I run again and here are the results: df4 <- read.csv(f

Re: [R] Warning message: NAs introduced by coercion

2019-01-08 Thread N Meriam
--- > David L. Carlson > Department of Anthropology > Texas A University > > -Original Message- > From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of N Meriam > Sent: Tuesday, January 8, 2019 1:38 PM > To: Michael Dewey > Cc: r-help@r-proj

Re: [R] Warning message: NAs introduced by coercion

2019-01-08 Thread David L Carlson
-Original Message- From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of N Meriam Sent: Tuesday, January 8, 2019 1:38 PM To: Michael Dewey Cc: r-help@r-project.org Subject: Re: [R] Warning message: NAs introduced by coercion Here's a portion of what my data looks like (text file fo

Re: [R] Warning message: NAs introduced by coercion

2019-01-08 Thread N Meriam
550|F|0-16:G>A-16:G>A" "3" "3" "3" "3" > > [6,] "1106702|F|0-8:C>A-8:C>A" "0" "0" "0" "0" > > > >> class(genod2) <- "numeric"Warning message:In class(genod

Re: [R] Warning message: NAs introduced by coercion

2019-01-08 Thread Michael Dewey
matrix" # read data > filn <-"simTunesian.gds"> snpgdsCreateGeno(filn, genmat = genod,+ sample.id = sample.id, snp.id = snp.id,+ snp.chromosome = snp.chromosome,+ snp.position = snp.position,+ snp.allele

Re: [R] Warning message: NAs introduced by coercion

2019-01-08 Thread N Meriam
t; class(genod2)[1] "matrix" > # read data > filn <-"simTunesian.gds"> snpgdsCreateGeno(filn, genmat = > genod,+ sample.id = sample.id, snp.id = snp.id,+ > snp.chromosome = snp.chromosome,+ snp.position = &g

Re: [R] Warning message: NAs introduced by coercion

2019-01-08 Thread PIKAL Petr
Hi see in line > -Original Message- > From: R-help On Behalf Of N Meriam > Sent: Tuesday, January 8, 2019 3:08 PM > To: r-help@r-project.org > Subject: [R] Warning message: NAs introduced by coercion > > Dear all, > > I have a .csv file called df4. (15752

[R] Warning message: NAs introduced by coercion

2019-01-08 Thread N Meriam
Dear all, I have a .csv file called df4. (15752 obs. of 264 variables). I apply this code but couldn't continue further other analyses, a warning message keeps coming up. Then, I want to determine max and min similarity values, heat map plot, cluster...etc > require(SNPRelate) > library(gdsfmt)

Re: [R] Warning message in openxlsx

2016-06-15 Thread peter dalgaard
320 223 11.5 68 9 30 Browse[1]> name [1] "O" Browse[1]> names [1] "Ozone" "Solar.R" "Wind""Temp""Month" "Day" -pd > > Regards > Petr > >> -----Original Message- >> From

Re: [R] Warning message in openxlsx

2016-06-15 Thread PIKAL Petr
To: r-help@r-project.org > Subject: [R] Warning message in openxlsx > > Hi All, > > I get the warning message > > Warning message: > In styles$font : partial match of 'font' to 'fonts' > > when executing > > > > xls_workbook <- t_create_workbook() > >

[R] Warning message in openxlsx

2016-06-14 Thread G . Maubach
Hi All, I get the warning message Warning message: In styles$font : partial match of 'font' to 'fonts' when executing > xls_workbook <- t_create_workbook() > xls_sheetname <- "Kunden" > xls_ds_to_save <- ds_merge1 > xls_filename <- paste0(data_created, "_Merge1_BW-SAP-Kunden_cleaned.xlsx") >

Re: [R] Warning message: Computation failed in `stat_bin()`: attempt to apply non-function

2016-03-19 Thread shahab
> > > -Original Message- > > From: shahab.mok...@gmail.com <javascript:;> > > Sent: Thu, 17 Mar 2016 19:01:19 +0100 > > To: r-help@r-project.org <javascript:;> > > Subject: [R] Warning message: Computation failed in `stat_bin()`: attempt > > to a

[R] Warning message: Computation failed in `stat_bin()`: attempt to apply non-function

2016-03-19 Thread shahab
Hi, I am trying to plot a sample dataset using ggplot2, but I am keep getting the following error message and an empty plot! Apparently something is wrong in the dataset, but what? R : pf<-read.csv('pseudo_facebook.tsv', sep='\t') ggplot(x=aes(friend_count), data=pf) + geom_histogram()

Re: [R] Warning message: Computation failed in `stat_bin()`: attempt to apply non-function

2016-03-18 Thread John Kane
ook at the distribution. John Kane Kingston ON Canada > -Original Message- > From: shahab.mok...@gmail.com > Sent: Thu, 17 Mar 2016 19:01:19 +0100 > To: r-help@r-project.org > Subject: [R] Warning message: Computation failed in `stat_bin()`: attempt > to apply non-functi

Re: [R] Warning message with "projectRaster" (package "raster"): 'from' has no cell values

2016-03-12 Thread David Winsemius
> On Mar 12, 2016, at 11:27 AM, Marine Regis wrote: > > Hello, > > > > I have two rasters with different resolution and projection. Generally posting questions about spatial functions will get faster and better responses on the sig-geo mailing list:

[R] Warning message with "projectRaster" (package "raster"): 'from' has no cell values

2016-03-12 Thread Marine Regis
Hello, I have two rasters with different resolution and projection. > r1 class : RasterLayer dimensions : 2510, 5233, 13134830 (nrow, ncol, ncell) resolution : 56, 56 (x, y) extent : 503198, 796246, 4917498, 5058058 (xmin, xmax, ymin, ymax) coord. ref. : +proj=utm

Re: [R] Warning Message With WordCloud

2016-02-23 Thread Boris Steipe
Assuming you have confirmed that your function parameters are correct, the problem likely lies with your data. Therefore a good strategy is to revert to a known good state and systematically work from there. Start from your working example and gradually change that into your real data,

[R] Warning Message With WordCloud

2016-02-23 Thread SHIVI BHATIA
Dear Team, I am working on Wordcloud package for one of my projects. While it running fine it is not showing the top most values in the output as it should. I have ran it earlier and it was fine but now there seems to be an issue. The wordcloud image shows the values which are appearing

Re: [R] Warning message with maxLik()

2015-07-21 Thread Maram SAlem
Dear Arne, The elements of the theta vector are indeed strictly positive. I've just tried to use instead : lamda = log (theta), which means that theta = exp (lamda), so as to get rid of the log() function that appears in the log-likelihood and is causing the 50 warnings, but still the

Re: [R] Warning message with maxLik()

2015-07-19 Thread Maram SAlem
Dear Arne, The elements of the theta vector are indeed strictly positive. I've just tried to use instead : lamda = log (theta), which means that theta = exp (lamda), so as to get rid of the log() function that appears in the log-likelihood and is causing the 50 warnings, but still the estimates

Re: [R] Warning message with maxLik()

2015-07-18 Thread Arne Henningsen
Dear Maram - Please do not start a new thread for the same issue but reply to previous messages in this thread [1]. - Please read my previous responses [1] more carefully, e.g. to use theta - exp( param ) which guarantees that all elements of theta are always positive. [1]

[R] Warning message with maxLik()

2015-07-17 Thread Maram SAlem
Dear All, I'm trying to get the MLe for a certain distribution using maxLik () function. I wrote the log-likelihood function as follows: theta -vector(mode = numeric, length = 3) r- 17 n -30 T-c(7.048,0.743,2.404,1.374,2.233,1.52,23.531,5.182,4.502,1.362,1.15,1.86,1.692,11.659,1.631,2.212,5.451)

[R] Warning message when using lmer function

2015-06-09 Thread li li
I got the following warning message when using the lmer function. Does anyone know what is the implication? Thanks! Warning message: In anova(model, ddf = lme4) : bytecode version mismatch; using eval __ R-help@r-project.org mailing list -- To

Re: [R] Warning message when starting RStudio

2015-04-24 Thread Sun Shine
On 23/04/15 13:41, Albin Blaschka wrote: Hello Am 23.04.2015 um 09:57 schrieb Berend Hasselman: On 23-04-2015, at 08:45, Sun Shine phaedr...@gmail.com wrote: Hi list Recently, when starting up RStudio, the following warning is being displayed: Error in tools:::httpdPort = 0L :

[R] Warning message when starting RStudio

2015-04-23 Thread Sun Shine
Hi list Recently, when starting up RStudio, the following warning is being displayed: Error in tools:::httpdPort = 0L : comparison (4) is possible only for atomic and list types I think that this is specific to RStudio because starting R in a terminal window doesn't produce this message.

Re: [R] Warning message when starting RStudio

2015-04-23 Thread Berend Hasselman
On 23-04-2015, at 08:45, Sun Shine phaedr...@gmail.com wrote: Hi list Recently, when starting up RStudio, the following warning is being displayed: Error in tools:::httpdPort = 0L : comparison (4) is possible only for atomic and list types I think that this is specific to RStudio

Re: [R] Warning message when starting RStudio

2015-04-23 Thread Albin Blaschka
Hello Am 23.04.2015 um 09:57 schrieb Berend Hasselman: On 23-04-2015, at 08:45, Sun Shine phaedr...@gmail.com wrote: Hi list Recently, when starting up RStudio, the following warning is being displayed: Error in tools:::httpdPort = 0L : comparison (4) is possible only for atomic and list

[R] Warning Message: In saveSWF({ : the executablepng2swf.exedoes not exist!

2014-05-17 Thread Cheryl Johnson
By using the animation package, I get the warning message In saveSWF({ : the executablepng2swf.exedoes not exist!. Help in understanding why this message is given will be appreciated. Thanks [[alternative HTML version deleted]] __

Re: [R] Warning Message: In saveSWF({ : the executablepng2swf.exedoes not exist!

2014-05-17 Thread Yihui Xie
That means saveSWF() cannot find SWF Tools, and you should either put it on PATH or provide its installation path. See `swftools` in ?animation::saveSWF Regards, Yihui -- Yihui Xie xieyi...@gmail.com Web: http://yihui.name On Sat, May 17, 2014 at 9:25 AM, Cheryl Johnson

[R] Warning message for TukeyHSD test - error

2014-03-21 Thread Valentina Lauria
Dear R list, I am trying to fit a one way anova with just one factor and 3 levels. One of my levels is significant av2-aov(site~Tryptophan, data=datafit) summary(av2) Df Sum Sq Mean Sq F value Pr(F) Tryptophan 1 155.3 155.32 5.875 0.025 * Residuals 20 528.8 26.44 ---

Re: [R] Warning message for TukeyHSD test - error

2014-03-21 Thread Rmh
you have only 1 df for tryptophan. make it a factor and then all shoukd work. Sent from my iPhone On Mar 21, 2014, at 12:38, Valentina Lauria valentina.lau...@plymouth.ac.uk wrote: Dear R list, I am trying to fit a one way anova with just one factor and 3 levels. One of my levels is

Re: [R] Warning message during starts up

2013-11-19 Thread S Ellison
During startup R gives a Warning message: Setting LC_CTYPE=en_US gnumeric failed What is the error and how can I fix it? Googling the error message provides a number of answers from various sites; perhaps you could try that? It seems silly to retype them here Incidentally, the answers I saw

[R] Warning message during starts up

2013-11-14 Thread Dereje Fentie
During startup R gives a Warning message: Setting LC_CTYPE=en_US gnumeric failed What is the error and how can I fix it? [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help

[R] Warning message: In eval(expr, envir, enclos) : non-integer #successes in a binomial glm!

2012-12-10 Thread Simon Kiss
Hi there I'm trying to fit a logistic regression model to data that looks very similar to the data in the sample below. I don't understand why I'm getting this error; none of the data are proportional and the weights are numeric values. Should I be concerned about the warning about

Re: [R] Warning message: In eval(expr, envir, enclos) : non-integer #successes in a binomial glm!

2012-12-10 Thread Elizabeth Fuller Bettini
Please unsubscribe me from this mailing list. Thank you Liz On Mon, Dec 10, 2012 at 8:40 AM, Simon Kiss sjk...@gmail.com wrote: R-help@r-project.org [[alternative HTML version deleted]] __ R-help@r-project.org mailing list

Re: [R] Warning message: In eval(expr, envir, enclos) : non-integer #successes in a binomial glm!

2012-12-10 Thread Berend Hasselman
On 10-12-2012, at 14:48, Elizabeth Fuller Bettini wrote: Please unsubscribe me from this mailing list. Thank you Liz You do that yourself. See the link at the very end of each message. Repeated here for your convenience: https://stat.ethz.ch/mailman/listinfo/r-help And don't hijack a

Re: [R] Warning message: In eval(expr, envir, enclos) : non-integer #successes in a binomial glm!

2012-12-10 Thread David Winsemius
On Dec 10, 2012, at 5:40 AM, Simon Kiss wrote: Hi there I'm trying to fit a logistic regression model to data that looks very similar to the data in the sample below. I don't understand why I'm getting this error; none of the data are proportional and the weights are numeric values.

Re: [R] Warning message: In scan(file, what, nmax...)

2012-12-03 Thread F86
Dear David, Than you for helping me. I tried with , Data1-read.table(/Users/kama/Analysis/GDP10.csv,header=TRUE,sep=,) Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : line 116 did not have 2 elements i also tried:

Re: [R] Warning message: In scan(file, what, nmax...)

2012-12-03 Thread Uwe Ligges
On 03.12.2012 11:30, F86 wrote: Dear David, Than you for helping me. I tried with , Data1-read.table(/Users/kama/Analysis/GDP10.csv,header=TRUE,sep=,) Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : line 116 did not have 2 elements So please how us lines

[R] Warning message: In scan(file, what, nmax...)

2012-12-02 Thread F86
Dear R-users, When i try - Data1-read.table(/Users/kama/Analysis/GDP10.csv,header=TRUE,sep=;) i am getting this error: Warning message: In scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : number of items read is not a multiple of the number of columns I wonder what Iam

Re: [R] Warning message: In scan(file, what, nmax...)

2012-12-02 Thread F86
In addition, I tried Data1-read.table(/Users/kama/Analysis/GDP10.csv, sep=\t, fill=TRUE) the result: *** caught segfault *** address 0xd020, cause 'memory not mapped' Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R

Re: [R] Warning message: In scan(file, what, nmax...)

2012-12-02 Thread F86
Also tries this: x-count.fields(/Users/kama/Analysis/GDP10.csv, sep=\t) x [1] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [38] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [75] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1

Re: [R] Warning message: In scan(file, what, nmax...)

2012-12-02 Thread Pascal Oettli
Hello, Search the option 'fill' in the help of the function 'read.table'. Regards, Pascal Le 03/12/2012 04:19, F86 a écrit : Dear R-users, When i try - Data1-read.table(/Users/kama/Analysis/GDP10.csv,header=TRUE,sep=;) i am getting this error: Warning message: In scan(file, what, nmax,

Re: [R] Warning message: In scan(file, what, nmax...)

2012-12-02 Thread David L Carlson
: [R] Warning message: In scan(file, what, nmax...) Also tries this: x-count.fields(/Users/kama/Analysis/GDP10.csv, sep=\t) x [1] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 [38] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1

[R] warning message

2012-10-15 Thread Shi, Tao
Hi list, Can somebody explain why there are these warning messages?  I just don't get it.  I'm using R 2.15.1 on WinXP. Thanks! Tao x [1] -2.143510 -1.157450 -1.315581  1.033562 -1.225440 -1.179909   ifelse(x0, log2(x), -log2(-x)) [1] -1.099975 -0.210950 -0.395700  0.047625 -0.293300

Re: [R] warning message

2012-10-15 Thread Shi, Tao
Never mind.  I got it.  Thanks! Tao - Original Message - From: Shi, Tao shida...@yahoo.com To: r-help@r-project.org r-help@r-project.org Cc: Sent: Monday, October 15, 2012 4:08 PM Subject: [R] warning message Hi list, Can somebody explain why there are these warning

Re: [R] warning message

2012-10-15 Thread Simon Knapp
The second and third arguments to ifelse are evaluated for all elements of x (producing your warnings), then the appropriate elements of each result are combined based on the (logical) values of the first argument to ifelse. On Tue, Oct 16, 2012 at 10:08 AM, Shi, Tao shida...@yahoo.com wrote: Hi

Re: [R] warning message

2012-10-15 Thread Shi, Tao
Thank you, Simon and Kevin! Tao - Original Message - From: Simon Knapp sleepingw...@gmail.com To: Shi, Tao shida...@yahoo.com Cc: r-help@r-project.org r-help@r-project.org Sent: Monday, October 15, 2012 4:25 PM Subject: Re: [R] warning message T he second and third arguments

[R] Warning Message: In if (deparse(params[[nm]][[3]]) != 1)

2012-09-19 Thread obuyacharles
I am using the gnls procedure in nlme package to fit a nonlinear model as: nl.fit-gnls(Y ~ b0*exp(b1/X), data = data1, params=list( b0~p1+I(p1^2)+p2+I(p2^2)+p3+I(p3^2)+p5+p6 b1~p8+p2+I(p2^2)+p3+p9+p10+p11),

Re: [R] Warning Message: In if (deparse(params[[nm]][[3]]) != 1)

2012-09-19 Thread Jeff Newmiller
Usually the source of such errors is the data you provide to the function. Since you have not followed the posting guide and provided a reproducible example, we are under a significant handicap in troubleshooting your problem.

Re: [R] Warning Message: In if (deparse(params[[nm]][[3]]) != 1)

2012-09-19 Thread obuyacharles
I am not sure if it is possible to provide a data set sufficient to fit this model and reproduce the error. However, I noticed that the warnings no longer show up when the number of predictors for b0 and b1 in b0~ and b1 ~ is small (3 to 5). Could this be an effect too many

Re: [R] warning message while plotting taylor diagram

2012-07-27 Thread Jim Lemon
On 07/26/2012 10:27 PM, Henrik Singmann wrote: Dear Waheed, As you correctly inferred, these are just warnings and dont need to bother you now. The maintainer/author of the taylor.diagram function should be more worried. These warnings just say that in upcoming versions of R the functions

Re: [R] warning message while plotting taylor diagram

2012-07-27 Thread Henrik Singmann
Dear Jim, indeed, you are right. As the OP did not include the package name I was to lazy to check where taylor.diagram actually is from. Would I have known that it is from plotrix I would have seen that it actually is not a problem of the author but of handing over the wrong object. As I

[R] warning message while plotting taylor diagram

2012-07-26 Thread yssp03
Dear all I am new to R and not know much about it. However through googling I am able to plot taylor diagram. Here is the message from R * taylor.diagram(obs,M3,pos.cor=FALSE,add=FALSE,pcex=1,col=darkgreen) Warning messages: 1: sd(data.frame) is deprecated. Use sapply(*, sd) instead. 2:

Re: [R] warning message while plotting taylor diagram

2012-07-26 Thread Henrik Singmann
Dear Waheed, As you correctly inferred, these are just warnings and dont need to bother you now. The maintainer/author of the taylor.diagram function should be more worried. These warnings just say that in upcoming versions of R the functions within taylor.diagram() will not work anymore.

Re: [R] warning message while plotting taylor diagram

2012-07-26 Thread yssp03
Dear Henrik Thank you so much for the clarification. Best regards waheed On Thu, Jul 26, 2012 at 9:32 PM, Henrik Singmann [via R] ml-node+s789695n463791...@n4.nabble.com wrote: Dear Waheed, As you correctly inferred, these are just warnings and dont need to bother you now. The

Re: [R] Warning message with read.csv.sql

2012-07-17 Thread Uwe Ligges
On 13.07.2012 14:00, Gabor Grothendieck wrote: On Thu, Jul 12, 2012 at 8:17 AM, Bharat Warule bwar...@gmail.com wrote: Hello, I am using read.csv.sql first time for reading the large data file.If I am ran this code that showns warning “closing unused connection”. Is it I am missing any

Re: [R] Warning message with read.csv.sql

2012-07-13 Thread Gabor Grothendieck
On Thu, Jul 12, 2012 at 8:17 AM, Bharat Warule bwar...@gmail.com wrote: Hello, I am using read.csv.sql first time for reading the large data file.If I am ran this code that showns warning “closing unused connection”. Is it I am missing any argument from my command or how to comeout from this

[R] Warning message with read.csv.sql

2012-07-12 Thread Bharat Warule
Hello, I am using read.csv.sql first time for reading the large data file.If I am ran this code that showns warning “closing unused connection”. Is it I am missing any argument from my command or how to comeout from this warning?. R code:- Library(sqldf) ip_dir_path -

Re: [R] Warning message: numerical expression has 1000 elements: only the first used

2012-05-31 Thread Özgür Asar
Hi, Your mistake seems to be in sum(v[1:x]) You create x as a vector but your treat it as a single number. v[1:x] expects x to be a single number and only considers its first element which is 1. If I understand your query correctly, the following might handle your problem: sum.vec -NULL

Re: [R] Warning message: numerical expression has 1000 elements: only the first used

2012-05-31 Thread R. Michael Weylandt
Ozgur -- No, this is not what the OP seems to be asking for (and it's bad code anyways -- I've mentioned the importance of pre-allocation to you before): OP, if I understand you, you are looking for a cumsum() operation: something like: t - rbinom(1000, 1, 0.5) t[t==0] - (-1) cumsum(t)

[R] warning message: coxme with package multcomp

2012-04-16 Thread Simon Tragust
Hi I'm encountering an error/warning when doing multiple comparisons with the package multcomp on a coxme model. My data: I'm looking at the removal of brood from the nest according to three treatments I applied on the brood. The brood and the workers caring about the brood in the nest,

[R] Warning message: Gamlss - Need help

2012-04-05 Thread Hanin Farah
Hi, I am running a negative binomial model using Gamlss and when I try to include random effect, I get the following message: Warning messages: 1: In vcov.gamlss(object, all) : addive terms exists in the mu formula standard errors for the linear terms maybe are not appropriate 2: In

[R] Warning message about closing a connection XXXX

2012-01-04 Thread Dan Abner
Hello everyone, After running the following code, I obtain this error message. mydata - read.table(textConnection(mystring), +header=TRUE, sep=,, +row.names=id, na.strings= ) mydata Warning message: closing unused connection 3 (mystring) = However, when I attempt to run

Re: [R] Warning message about closing a connection XXXX

2012-01-04 Thread David Winsemius
On Jan 4, 2012, at 9:53 AM, Dan Abner wrote: Hello everyone, After running the following code, I obtain this error message. mydata - read.table(textConnection(mystring), +header=TRUE, sep=,, +row.names=id, na.strings= ) mydata Warning message: closing unused connection 3

Re: [R] Warning message about closing a connection XXXX

2012-01-04 Thread William Dunlap
-project.org] On Behalf Of David Winsemius Sent: Wednesday, January 04, 2012 7:10 AM To: Dan Abner Cc: r-help@r-project.org Subject: Re: [R] Warning message about closing a connection On Jan 4, 2012, at 9:53 AM, Dan Abner wrote: Hello everyone, After running the following

Re: [R] Warning message about closing a connection XXXX

2012-01-04 Thread Prof Brian Ripley
[mailto:r-help-boun...@r-project.org] On Behalf Of David Winsemius Sent: Wednesday, January 04, 2012 7:10 AM To: Dan Abner Cc: r-help@r-project.org Subject: Re: [R] Warning message about closing a connection On Jan 4, 2012, at 9:53 AM, Dan Abner wrote: Hello everyone, After running the following

Re: [R] Warning message about closing a connection XXXX

2012-01-04 Thread Duncan Murdoch
-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of David Winsemius Sent: Wednesday, January 04, 2012 7:10 AM To: Dan Abner Cc: r-help@r-project.org Subject: Re: [R] Warning message about closing a connection On Jan 4, 2012, at 9:53 AM, Dan Abner wrote: Hello everyone, After running

Re: [R] Warning message about closing a connection XXXX

2012-01-04 Thread Prof Brian Ripley
Bill Dunlap Spotfire, TIBCO Software wdunlap tibco.com -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of David Winsemius Sent: Wednesday, January 04, 2012 7:10 AM To: Dan Abner Cc: r-help@r-project.org Subject: Re: [R] Warning message

Re: [R] Warning message about closing a connection XXXX

2012-01-04 Thread peter dalgaard
On Jan 4, 2012, at 19:21 , Duncan Murdoch wrote: On 12-01-04 12:25 PM, Prof Brian Ripley wrote: Rather than using a sledgehammer, use showConnections(all=TRUE) to see all connections, and close the ones you want to (and its help page shows you how). In older versions that do give the

Re: [R] Warning message about closing a connection XXXX

2012-01-04 Thread Martin Morgan
: Wednesday, January 04, 2012 7:10 AM To: Dan Abner Cc: r-help@r-project.org Subject: Re: [R] Warning message about closing a connection On Jan 4, 2012, at 9:53 AM, Dan Abner wrote: Hello everyone, After running the following code, I obtain this error message. mydata- read.table(textConnection

[R] Warning message interpretation

2011-11-07 Thread eric
Using the rmarketdata package and getting a warning message. What does this warning message tell me ? What could I do to eliminate or address it ? require(rdatamarket) Loading required package: rdatamarket Loading required package: zoo Warning message: In assignInNamespace(as.Date.numeric,

Re: [R] Warning message interpretation

2011-11-07 Thread Duncan Murdoch
On 11-11-07 8:08 PM, eric wrote: Using the rmarketdata package and getting a warning message. What does this warning message tell me ? What could I do to eliminate or address it ? require(rdatamarket) Loading required package: rdatamarket Loading required package: zoo Warning message: In

[R] Warning message in summary of PGLM

2010-07-15 Thread Ana Navarrete, Anthropologisches Inst.
Dear Sir, When requesting the summary of pglm analyses in R, I encounter repeatedly the following warning message: Warning message: In pf(Fstat, object$k - 1, object$n - object$k, ncp = 0, lower.tail = FALSE, : full precision was not achieved in 'pnbeta' This message appears both with

Re: [R] Warning message in summary of PGLM

2010-07-15 Thread Prof Brian Ripley
On Thu, 15 Jul 2010, Ana Navarrete, Anthropologisches Inst. wrote: Dear Sir, When requesting the summary of pglm analyses in R, I encounter repeatedly the following warning message: Warning message: In pf(Fstat, object$k - 1, object$n - object$k, ncp = 0, lower.tail = FALSE, : full

Re: [R] Warning message

2010-05-10 Thread Dennis Murphy
Hi: A univariate t-distribution with 1 df is equivalent to the standard Cauchy distribution, for which it is well established that the population mean does not exist. You're basically simulating a vector version of the Cauchy distribution (an IID 8-dimensional version), so the same problem is

Re: [R] Warning message

2010-05-10 Thread Peter Dalgaard
Shant Ch wrote: Warning messages: 1: In if (freq) x$counts else { : the condition has length 1 and only the first element will be used ... hist(W,breaks=20,probability=T) A variable called T lying around with length(T) != 1 ? Try probability=TRUE instead. -- Peter Dalgaard Center for

[R] Warning message

2010-05-09 Thread Shant Ch
Hello, I want to draw a histogram of the mean of sample observations drawn from multivariate t distribution. I am getting the following error corresponding to the code I used. Though I am getting the graph, but I am curious to know the warning message. Warning messages: 1: In if (freq)

[R] warning message cran

2010-04-27 Thread Gustave Lefou
Dear R users, I have downloaded some packages. The beginning is very slow until I am allowed to choose a CRAN server. Then it is faster. I get a warning message each time at the end of the download : The downloaded packages are in C:\etc Warning message: In open.connection(con, r) :

Re: [R] warning message cran

2010-04-27 Thread Uwe Ligges
On 27.04.2010 12:21, Gustave Lefou wrote: Dear R users, I have downloaded some packages. The beginning is very slow until I am allowed to choose a CRAN server. Then it is faster. I get a warning message each time at the end of the download : The downloaded packages are in C:\etc

Re: [R] warning message cran

2010-04-27 Thread Gustave Lefou
Thank you very much Siri and Uwe. So there is no problem with the packages downloaded. 2010/4/27 Uwe Ligges lig...@statistik.tu-dortmund.de On 27.04.2010 12:21, Gustave Lefou wrote: Dear R users, I have downloaded some packages. The beginning is very slow until I am allowed to choose a

[R] Warning message when Loading package svMisc in R 2.10.0

2009-10-27 Thread Qi Li
Hi, I have a problem when using R 2.10.0, Loading required package: svMisc Warning message: package 'svMisc' was built under R version 2.9.1 and help will not work correctly HOW to fix it? __ R-help@r-project.org mailing list

Re: [R] Warning message when Loading package svMisc in R 2.10.0

2009-10-27 Thread Orvalho Augusto
I did not try. But you try to update all the packages with: update.packages() Good luck Caveman On Tue, Oct 27, 2009 at 6:28 AM, Qi Li ericq...@hotmail.com wrote: Hi, I have a problem when using R 2.10.0, Loading required package: svMisc Warning message: package 'svMisc' was built under R

Re: [R] Warning message when Loading package svMisc in R 2.10.0

2009-10-27 Thread Richardson, Patrick
-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Orvalho Augusto Sent: Tuesday, October 27, 2009 3:14 AM To: r-help@r-project.org Subject: Re: [R] Warning message when Loading package svMisc in R 2.10.0 I did not try. But you try to update all the packages with: update.packages

Re: [R] Warning message when Loading package svMisc in R 2.10.0

2009-10-27 Thread Uwe Ligges
Augusto Sent: Tuesday, October 27, 2009 3:14 AM To: r-help@r-project.org Subject: Re: [R] Warning message when Loading package svMisc in R 2.10.0 I did not try. But you try to update all the packages with: update.packages() Good luck Caveman On Tue, Oct 27, 2009 at 6:28 AM, Qi Li ericq...@hotmail.com

[R] warning message when running quantile regression

2009-05-31 Thread jude.ryan
Hi All, I am running quantile regression in a for loop starting with 1 variable and adding a variable at a time reaching a maximum of 20 variables. I get the following warning messages after my for loop runs. Should I be concerned about these messages? I am building predictive models and am

[R] Warning message as a result of logistic regression performed

2009-05-27 Thread Winter, Katherine
I am sorry if this question sounds basic but I am having trouble understanding a warning message I have been receiving in R after attempting logistic regression. I have been using the logistic regression function in R to analyse a simulated data set. The dependent variable failure has an

Re: [R] Warning message as a result of logistic regression performed

2009-05-27 Thread Gavin Simpson
Try reading this thread: http://thread.gmane.org/gmane.comp.lang.r.general/134368/focus=134475 especially the posts by I Kosmidis which show you how to diagnose problems in logit model fits like this. There is a statement about this warning in ?glm as well and a pointer to a reference which

[R] warning message while installing a package

2009-05-15 Thread meenusahi
Dear all I was trying to install the package ISwR and got the following message. I was connected to the internet. Warning: unable to access index for repository http://cms.unipune.ernet.in/computing/cran/bin/windows/contrib/2.8 Please help. regards M.

Re: [R] warning message while installing a package

2009-05-15 Thread Duncan Murdoch
On 5/15/2009 11:04 AM, meenus...@gmail.com wrote: Dear all I was trying to install the package ISwR and got the following message. I was connected to the internet. Warning: unable to access index for repository http://cms.unipune.ernet.in/computing/cran/bin/windows/contrib/2.8 That's a

Re: [R] warning message while installing a package

2009-05-15 Thread Marc Schwartz
On May 15, 2009, at 9:04 AM, Duncan Murdoch wrote: On 5/15/2009 11:04 AM, meenus...@gmail.com wrote: Dear all I was trying to install the package ISwR and got the following message. I was connected to the internet. Warning: unable to access index for repository

[R] warning message while using mice Multivariate Imputation by Chained Equations

2008-08-27 Thread [EMAIL PROTECTED]
Hi there, I am a beginner with R. Anyone could help to explain me what the following warning msg means? Warning messages: 1: In any(predictorMatrix[j, ]) : coercing argument of type 'double' to logical Got 6 of it...although further calculations were done. Because of this warning I am not

[R] Warning message in if else statement

2008-07-23 Thread Monica Pisica
Hi, I am using an if else statement inside a function …. If I use that function I have no problems …. If I use the function with the if else statement inside a second function I get the following waring: Warning message: In if (pval == 0) p_value - 2.2e-16 else p_value - pval : the

Re: [R] Warning message in if else statement

2008-07-23 Thread Erik Iverson
Monica - Monica Pisica wrote: Hi, I am using an if else statement inside a function …. If I use that function I have no problems …. If I use the function with the if else statement inside a second function I get the following waring: Warning message: In if (pval == 0) p_value - 2.2e-16 else

Re: [R] Warning message in if else statement

2008-07-23 Thread Monica Pisica
internally I get the warning. Any idea why? Thanks, Monica Date: Wed, 23 Jul 2008 12:24:55 -0500 From: [EMAIL PROTECTED] To: [EMAIL PROTECTED] CC: r-help@r-project.org Subject: Re: [R] Warning message in if else statement Monica - Monica Pisica wrote: Hi, I am using an if else

Re: [R] Warning message in if else statement

2008-07-23 Thread Monica Pisica
the warning. Any idea why? Thanks, Monica Date: Wed, 23 Jul 2008 12:24:55 -0500 From: [EMAIL PROTECTED] To: [EMAIL PROTECTED] CC: r-help@r-project.org Subject: Re: [R] Warning message in if else statement Monica - Monica Pisica wrote: Hi, I am using an if else statement

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