Thanks!
Sorry, I forgot to add the output of meta.summaries:
Random-effects meta-analysis
Call: meta.summaries(d = CoeffVector, se = StdErrorVector,
method = random,
logscale = FALSE)
Summary effect=NaN 95% CI (NaN, NaN)
If anyone has further hints, what the problem is, that
We are trying to read a sas export file into R. (Works fine on Mac by ftping
the export file from solaris box and then importing to R with read.xport, this
gives rational numbers etc.)
Trying to do this on an IBM Power p655 running linux, reading the same sas
export file as used on MAC, in
Dear List,
How do I pick the p-value out of the urppTest result?
For adfTest the p-value can be extracted by
[EMAIL PROTECTED]
following
A2 - adfTest(myData[,i], lags=2, type=c(c))
What do I do for urppTest? The above doesn't seem to work. There is a slot
@test with
$output, which is a
Hello,
Could someone give me a hint about what might be the difference between running
urppTest
with Z-alpha and Z-tau in type=c(Z-alpha, Z-tau)?
Is this the underlying equation:
delta_y(t) = mu + tau*timetrend+(1-rho)*y(t-1) + alpha_1*delta_y(t-1) + ... +
alpha_k*delta_y(t-k) + error term ?
. Is there a more direct way to do this?
Thanks!
Anne
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scores consistent, does that mean I have the take the
absolute value of these scores before analyzing them?
Thanks in advance for any help!
Anne
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= weights, MPR
Regards,
Kylie-Anne Richards
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Hello,
I would like to label outliers (or all dots) in a plot
plot(as.matrix(ValAddInd_byYear), as.matrix(Cons_Elec_Ind_byYear))
ideally by the 30 different row.names, but anything else (x or y values, for
example)
would already be helpful.
I've tried various things with pch, but they didn't
: *** [R] Error 1
Any ideas would be appreciated. I will continue reading the
documentation.
Anne Shelton
ITS Research IT Group
University at Albany
1400 Washington Ave. - MSC-100
Albany, NY 1
Office: 437-4525 Cell: 788-8634
[[alternative HTML version deleted
')
Error in colnames-(`*tmp*`, value = c(ts(mod[, 1]), ts(mod[, 2]) :
attempt to set colnames on object with less than two dimensions
Can anybody see what is wrong and what I need to do different?
Thanks,
Anne Hertel
Anne M. K
Hi Dimitri,
You could write
z - trunc(x/1)
z
[1] 1 12 8
y - x-trunc(x/1)*1
y
[1] 1999 2000 1997
And there you have it.
Cheers,
Anne Hertel
On Thu, 20 Oct 2005 17:40:10 -0200
Dimitri Szerman [EMAIL PROTECTED] wrote:
Hi there,
From the vector X of integers,
X = c(11999
DeaR list
I would like to know if there is a direct method to compute the
expected remaining survival time for a subject having survived up to
time t. survexp gives me the probabilty for subject S to survive up to
day D
Thanks
--
Anne
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surviving time (or
the residual survival time quantiles)
Thanks a lot
--
Anne
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help you can offer.
Kylie-Anne Richards
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and developping
alone) but am quite willing to learn. I would like ultmately to
enhance the print. and latex. methods for the summary.formula family
of Hmisc for French and perhaps German and Italian too as I do have to
produce official output in these languages.
Anne
2005/8/22, Frank E Harrell Jr
Save your table in a text file ( see ?write.table ) with the separator
set to \t ; you can then import it into excel
for the nb of digits use
options(digits=3)
see ?options
Anne
2005/8/19, Fredrik Thuring [EMAIL PROTECTED]:
Hi!
I have a few questions concerning reading
06
day 20
language R
Hmisc version: 3.0-6 ;
On my home computer (LINUX and Windows XT) with the same (latest) R and
Hmisc version installed, I had no problem with getHdata...
Thanks
Anne
Frank E Harrell Jr [EMAIL PROTECTED]
09.08.2005 22:19
A
[EMAIL PROTECTED]
cc
r-help
the connexion?
Anne
Sean O'Riordain [EMAIL PROTECTED]
11.08.2005 08:16
Veuillez répondre à
[EMAIL PROTECTED]
A
[EMAIL PROTECTED] [EMAIL PROTECTED], r-help
r-help@stat.math.ethz.ch
cc
Objet
Re: [R] connexion problem getHdata (HMisc)
Hi Anne,
does update.packages() work, or does it just
Hi Sean,
Thanks for the tip, I will try to set up the command line in the target
field as recommended in the faq
Anne
Sean O'Riordain [EMAIL PROTECTED]
11.08.2005 08:36
Veuillez répondre à
[EMAIL PROTECTED]
A
[EMAIL PROTECTED] [EMAIL PROTECTED]
cc
Objet
Re: [R] connexion problem
**
This email and any files transmitted with it are confidenti...{{dropped}}
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PLEASE do read the
openinig not possible
Furthermore :
connexion to 'biostat.mc.vanderbilt.edu' impossible on port 80
Can one get around this problem?
NOTE: I am not an administrator on the system
Anne Piotet
tél: 022 809 54 36
e-mail: [EMAIL PROTECTED]
Office cantonal de l'assurance-invalidité
it at z=0.
I will be back with questions on computationally efficient time dependant
survival functions next month.
Cheers,
Kylie-Anne
- Original Message -
From: Thomas Lumley [EMAIL PROTECTED]
To: Kylie-Anne Richards [EMAIL PROTECTED]
Cc: r-help@stat.math.ethz.ch
Sent: Sunday, July 17
)+).
And then proceeding as mention in the above paragraph (clearly not an
efficient way of doing things).
- Original Message -
From: Thomas Lumley [EMAIL PROTECTED]
To: Kylie-Anne Richards [EMAIL PROTECTED]
Cc: r-help@stat.math.ethz.ch
Sent: Saturday, July 16, 2005 12:31 AM
Subject: Re: [R] Coxph
, :
variable lengths differ
In addition: Warning message:
'newdata' had 1 rows but variable(s) found have 13922 rows
Execution halted
I appreciate the time anyone can spare to help me with my problem, and
apologies for it's simplistic nature.
Many thanks,
Kylie-Anne
Adaikalavan Ramasamy
Hello,
I am fitting a coxph model with factors. I am running into problems when
using 'survfit'. I am unsure how R is treating the factors when I fit, say:
DATA-data.frame(time.sec,done,f.pom=factor(f.pom),po,vo)
final-coxph(Surv(time.sec,done)~f.pom*vo+po,data=DATA)
A work-around for this problem was posted on April 7 by Bill
Venables and Deepayan Sarkar using a panel function:
Anne
On Thu, 7 Apr 2005, Deepayan Sarkar wrote:
DS On Thursday 07 April 2005 17:51, Anne York wrote:
DS The following command produces red axis line in a
pairs
DS plot:
DS
try an other program where y and x are directly calculate in sce
function but the time of running was to long.
Thanks in advance,
Anne KERVAHU
rm(list=ls())
nbr=10
#list of data
x_a-c(0,0.5,1,1.5,2,3,4,6,8,15,20,40,60,80,120)
y_a-c
Thanks Bill and Deepayan for the panel function idea.
Somehow I've always associated the panel
functions with lattice -- not sure why, but thanks for
pointing out their more universal applicability.
Anne
On Thu, 7 Apr 2005, Deepayan Sarkar wrote:
DS On Thursday 07 April 2005 17:51, Anne York
= factor(iris2$Species)
pairs(iris2[1:4], main = Anderson's Iris Data -- 3
species, pch = +,
col = c( black,red, green3,blue)[ unclass(iris2$Species)])
I'd appreciate suggestions for a simpler work-around.
Thanks,
Anne
__
R-help@stat.math.ethz.ch mailing
, upper =
psup, :
L-BFGS-B needs finite values of fn
And I don't understand why it doesn't work. Do I forget an option in optim
computation. Or is there an other function instead of optim that I can use.
Thanks in advance
Anne Kervahu
[EMAIL PROTECTED
On Sat, 26 Mar 2005, Hess, Stephane wrote:
HS Dear all,
HS
HS I have 5 plots that I would like to include in a single figure, spread
over two rows. If I use mfrow=c(2,3), and produce my plots one after the other,
I will end up with three plots in the first row, and 2 in the second row,
Slides and Other Formats)
for legend try:
legend(locator(1),legend=leg.text,lty=1, col=leg.col)
Anne
Ciao! Vorrei essere nelle vacanze...
- Original Message -
From: Angela Re [EMAIL PROTECTED]
To: r-help@stat.math.ethz.ch
Sent: Thursday, January 13, 2005 4:07 PM
Subject: [R
packages
Anne
- Original Message -
From: [EMAIL PROTECTED]
To: r-help@stat.math.ethz.ch
Sent: Wednesday, January 12, 2005 3:17 PM
Subject: [R] (no subject)
hi,
I am trying to grow a classification tree on some data, but I have a
little
problem. In order to do so I have to use
You could be really classical and use the iris data!
have a look at:
http://biostat.mc.vanderbilt.edu/twiki/bin/view/Main/DataSets
the titanic dataset is a real classic one!
However it depends very much what you want to study:
Anne
- Original Message -
From: Talita Leite [EMAIL
well, all these responses address part of my question!
- what about citing people who helped with comments/ suggestions even code
on the list? I do think they deserve aknowledgement!
Thanks
Anne
- Original Message -
From: Romain François [EMAIL PROTECTED]
To: Gabor Grothendieck
, butis nowhere mentionned), no
mention were made of the statistical methods used (only global results were
cited as god divine truths ), not to mention authors/contributors of
packages methods etc...
So I do fully intend to be as honest as possible
Cheers
Anne
- Original Message
Well I saw the title graphical table... and had just a cursory glance
However I do use this function which is good if not too many categories are
represented.
Anne
- Original Message -
From: Marc Schwartz [EMAIL PROTECTED]
To: Anne [EMAIL PROTECTED]
Sent: Monday, January 10, 2005 5:54
Thank you all for your help!
I tried successfully the Anova() procedure in car packagea and now am woking
on John Fox solution to display effects...
Anne
- Original Message -
From: Robert Andersen [EMAIL PROTECTED]
To: Anne [EMAIL PROTECTED]
Sent: Friday, January 07, 2005 6:43 PM
of the predictors: any sugestion?)
OK, I probably miss something here (no experience with (non ordinal) polytomous
logistic regression yet!)
Thank very much to all
Anne
Anne Piotet
Tel: +41 79 359 83 32 (mobile)
Email: [EMAIL PROTECTED
for
the moment...sorry! when I find it again I'll send it to you) and seemed to
work to the satisfaction of the clients
Anne
- Original Message -
From: Robin Hankin [EMAIL PROTECTED]
To: Anne [EMAIL PROTECTED]
Cc: Robin Hankin [EMAIL PROTECTED]
Sent: Friday, January 07, 2005 1:47 PM
Thank you, John! it is exactly what I need...looking forward to apply it
Anne
what would I become without this list?
- Original Message -
From: John Fox [EMAIL PROTECTED]
To: 'Anne' [EMAIL PROTECTED]
Cc: 'R list' r-help@stat.math.ethz.ch
Sent: Friday, January 07, 2005 3:56 PM
Subject
://www.sourcekeg.co.uk/cran/bin/windows/contrib/1.9/
but trying to install it gave me the message
library(vcd)
Error in library(vcd) : 'vcd' is not a valid package -- installed 2.0.0?
last modification date was 14-Nov-2004
Thanks Anne
Anne
Thanks! it seems I had a very cumbersome way of installing libraries...
Anne
- Original Message -
From: Uwe Ligges [EMAIL PROTECTED]
To: Anne [EMAIL PROTECTED]
Cc: R list r-help@stat.math.ethz.ch
Sent: Thursday, January 06, 2005 11:55 AM
Subject: Re: [R] library vcd for R rw2001
I use Frank Harrell's library Hmisc to do this, it is very convenient!
library(Hmisc)
label(myVar)-my variable
Anne
- Original Message -
From: Denis Chabot [EMAIL PROTECTED]
To: r-help@stat.math.ethz.ch
Sent: Thursday, January 06, 2005 3:40 PM
Subject: [R] labels attached to variable
in seq.Date(along = object) : `from' must be specified
#??? I have no date objects present in the model???
Thanks
Anne
Anne Piotet
Tel: +41 79 359 83 32 (mobile)
Email: [EMAIL PROTECTED]
---
M-TD
x-c(-3. -4.7, -.005, 1, 9)
length(x[x0])
[1] 3
Anne
- Original Message -
From: Frederic renaud [EMAIL PROTECTED]
To: r-help@stat.math.ethz.ch
Sent: Wednesday, January 05, 2005 5:07 PM
Subject: [R] count element in column
Hi,
I 've a matrix n*1 (thus a column) and I would like
Hi!
Is there an easy way to add to the scree-plot labels to each value pertaining
to the cumulative proportion of explained variance?
Thanks and a happy new year
Anne
Anne Piotet
Tel: +41 79 359 83 32 (mobile)
Email: [EMAIL PROTECTED
Anne Shelton
ITS Research IT Group
University at Albany
1400 Washington Ave. - MSC-100
Albany, NY 1
Office: 437-4525 Cell: 788-8634
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PLEASE do read the posting
(this is for presentation purposes)
I guess I'm looking for a generalized version of relevel...
Thanks
Anne
Anne Piotet
Tel: +41 79 359 83 32 (mobile)
Email: [EMAIL PROTECTED]
---
M-TD Modelling and Technology
Sorry, sorry
of course
levels(testf)[c(2,1,3)]
will do the job
My excuses to all
Anne
PS I will meditate the following saying
la parole est d'argent et le silence est d'or
BONNES FETES A TOUS
SEASONAL GREETINGS
Anne Piotet
Tel: +41
Thanks to all of you; i should be able now to get around the problem!
Anne
- Original Message -
From: Anne [EMAIL PROTECTED]
To: R list [EMAIL PROTECTED]
Sent: Wednesday, December 22, 2004 1:10 PM
Subject: [R] RE ordering levels
Sorry, sorry
of course
levels(testf)[c(2,1,3
I have installed Parallel R on a LINUX Cluster and I am trying to initiate
the Parallel engine function in pR but I am receiving this error
Error in namespaceExport(ns, exports) : undefined exports: fixPre1.8
StartPE(2)
chr [1:2]
I have installed Parallel R on a LINUX Cluster and I am trying to initiate
the Parallel engine function in pR but I am receiving this error
Error in namespaceExport(ns, exports) : undefined exports: fixPre1.8
StartPE(2)
chr [1:2]
want to impute the missing values. Is there a nice way to drop the NA
factor instead of rewriting something of the sort
dat$x.f-factor(dat$x); levels(dat$x.f)-c(A1,A2,A3,A4);
length(dat$x.f)?
Thanks
Anne
Anne Piotet
Tel: +41 79 359 83 32
Thank you! so easy and I did not think of it!
- Original Message -
From: Chuck Cleland [EMAIL PROTECTED]
To: Anne [EMAIL PROTECTED]
Cc: R list [EMAIL PROTECTED]
Sent: Monday, December 06, 2004 2:12 PM
Subject: Re: [R] removing NA as a level
dat$x.f - factor(replace(dat$x.f, dat$x.f
patient
answers !)
Anne
- Original Message -
From: Tim Cutts [EMAIL PROTECTED]
To: [EMAIL PROTECTED]
Cc: [EMAIL PROTECTED]; [EMAIL PROTECTED]
Sent: Thursday, December 02, 2004 6:17 PM
Subject: Re: [R] A possible way to reduce basic questions
On 2 Dec 2004, at 1:23 am, Gabor Grothendieck
Frank, thank you very much for your answer, as it fixed up nicely my problem. I
am really sorry to have asked a question which you already answered a long time
ago, but I am a bit overwhelmed with the R, contributed packages and help list
documentationAnyway thanks again
Anne
PS isn't
this:
Lme1-lme(x~(A+B+C+D+E)^2, random=list(grp
=pdBlocked(list(pdIdent(~Z-1),pdIdent(~W-1)
I would like to nest Z in A and C (C/A/Z), an W in B and C (C/B/W) (A,B,C
being 3 fixed factors with two levels).
If you have a response to this kind of problem, could you please help me.
Thank you,
Anne
) :
unused argument(s) (monotone ...)
Any idea?
thanks anne
thank for your help
Anne
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Dear R helpers!
Is there an utility for multiple logistic regression where the response is not
ordinal? As the predictors do not satisfy the necessary hypothesis, I cannot
use discriminant analysis.
Thanks and have a nice R-day
Anne
[[alternative HTML version deleted
I have a problem with plot for summary
s-summary(response~ x1+x2+x3+x4+x5+x6+x7+
+ x8+ x9+x10)
plot(s)
Error in plot.new() : Figure margins too large
I tried to set the margins to null with par(mai=c(0,0,0,0))
but keep getting the same error message
What is wrong?
Thanks
Anne
intro and through the R lists and I can't find the answer.
Thanks for your help
Anne
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://mdbtools.sourceforge.net/
I'm wondering if anyone in the R community has tried using
this software to use MS-Access databases in R with a Linux
system. If so, Were you successful? What kind of problems
did you encounter?
Thank-you for your attention.
Anne York
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Does R have built in Gumbel distribution (pdf, ecdf, hazard, parameters estimation)
for the minimum case?
Thanks
Anne
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PLEASE
' were specified differently from the fit
(I looked in the help and found the example
x - rnorm(15)
y - x + rnorm(15)
new - data.frame(x = seq(-3, 3, 0.5))
predict(lm(y ~ x), new, se.fit = TRUE)
where is the difference?)
Anne
Thanks Petr,
That was indeed the root of the problem!
Have a nice week end
Anne
In fact it must be the problem
- Original Message -
From: Petr Pikal [EMAIL PROTECTED]
To: [EMAIL PROTECTED]; Anne [EMAIL PROTECTED]
Sent: Friday, July 16, 2004 1:39 PM
Subject: Re: [R] small problem
the new data.frame
I looked up with conflicts() to see if I had masked objects in the search
path potentially causing this problem
but found none
Thanks and a good week end! (I for one need it)
Anne
Anne Piotet
Tel: +41 79 359 83 32 (mobile)
Email
use inverseTrans
.
Thank for any help
Anne
Anne Piotet
Tel: +41 79 359 83 32 (mobile)
Email: [EMAIL PROTECTED]
---
M-TD Modelling and Technology Development
PSE-C
CH-1015 Lausanne
the interpretation (like in a finite elements result plot)
How is taht possible?
Thanks
Anne
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yes.. legend sould help. I still do not know how to paint my color sacle
and put the corresp. labels correctly
Thanks
Anne
- Original Message -
From: Berton Gunter [EMAIL PROTECTED]
To: Anne [EMAIL PROTECTED]
Sent: Thursday, July 15, 2004 5:55 PM
Subject: Re: [R] color scale to label
Thanks! That is what I was looking for!
Anne
- Original Message -
From: Martin Maechler [EMAIL PROTECTED]
To: Anne [EMAIL PROTECTED]
Cc: R list [EMAIL PROTECTED]
Sent: Thursday, July 15, 2004 6:42 PM
Subject: Re: [R] color scale to label a plot
Anne == Anne Piotet [EMAIL PROTECTED
Thank you! It should do the job... (it was jeust a question to know where to
look!)
Anne
- Original Message -
From: Adaikalavan Ramasamy [EMAIL PROTECTED]
To: Anne [EMAIL PROTECTED]
Sent: Tuesday, July 13, 2004 2:45 PM
Subject: Re: [R] table lookup n R
See match(), %in% and related
desperate!
Anne
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Hello RHelpers!
I'm very ashamed but
I'm creating quite a lot of plots in a big loop...each times the program ask me :
Hit Return to see next plot:
How do I avoid that?
Many, many thanks as always
Anne
Anne Piotet
Tel: +41 79 359 83
I've absolutely no experience with fitting logistic regression model, but as I have a
data set with categorical response it seems a reasonable first bet. How can I get the
marginal effect? (dp/d(beta))
Thanks
Anne
[[alternative HTML version deleted
functions is used in this procedure?
- how do I back transform my estimate (y hat ) to the originasl scale?
- is there a closed analytical description of the model used? If so, how do I get it?
Thanks a lot
Anne
Anne Piotet
Email: [EMAIL PROTECTED
Hi R-helpers!
I'd like to compute the values
x(i)-x(n-i-1) for i=1 n/2 or similar (as way of testing distribution symmetry
hypothesis). It is very easy to do that with a loop but can that be avoided?
Thanks
Anne
[[alternative HTML version deleted
Giovanni Petris wrote:
Hello,
I wanted to share with a colleague a few R functions that
I wrote. To this purpose, I created a small package on my machine
(Unix) and emailed it to her. Now she is having troubles
installing the package on her Windows machine. It seems
that on her side,
with it as it converts data files among many spreadsheets and
statistics programs.
http://www.conceptual.com/dbmscopt.htm
However, somewhat recently they were purchased by SAS, so
I'm not sure of current state of the program. There are
probably other commercial packages as well.
Anne
What R functionnalities are there to do missing values imputation (substantial
proportion of missing data)?
I would prefer to use maximum likelihood methods ; is the EM algorithm implemented? in
which package?
Thanks
Anne
Anne Piotet
...
How do I correct the problem?
Thanks
Anne
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!
How do I get the labels of the datas in the plot?
plot(pam(dat, 4))Thanks Anne
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need to identify the points in the
first plot (datas around the centroids) , I do not seem to be able to use the identify
function as the profile plot is produced directly after the 1st one
I would need to labels the points in the 1st plot. How do I get to do that?
Thanks
Anne
to plot one single row of data (strange plot with the
names of variables appearing).
Thanks in advance for your help,
Anne Gosset
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composition change) , and I want these points
to appear on the same graph...I do know how to change the appearance of all the plots
with the par() command or the points()...
Thanks
Anne
[[alternative HTML version deleted]]
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. )
Hoping there is an easy solution to this question,
Anne York
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Sorry for wasting the list for this. Had a blind spot. It
is very easy. Just include the par() commands inside the R
chunks that generate the plots.
Anne
On Thu, 4 Dec 2003, Anne York wrote:
I'm using Sweave to generate LaTeX output from R. Thank-you
very much for this capability
it)
Thanks
Anne
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Anne
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functions if I can help it,
I'm interested to know if
a) it is possible to integrate R in such a way?
b) naturally as I would sell the end product, what the royalties arrangements are
c) has anybody in the list experience with such a project?
Thanks for the help!
Anne
[[alternative HTML
As a newbie to R, I need to learn my way around (no previous experience
of S).What books, doc for R are recommended? I'm interested primarly in
non linear regression and process modelling (and have downloaded the R
documentation from the site).
Thanks for all tips
Anne
for any help!
Anne
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Thanks! yes it WORKS
Anne
- Original Message -
From: Mathieu Ros [EMAIL PROTECTED]
To: Anne Piotet [EMAIL PROTECTED]
Cc: [EMAIL PROTECTED]
Sent: Tuesday, July 15, 2003 4:58 PM
Subject: Re: [R] How to read in data
AP == Anne Piotet [EMAIL PROTECTED] disait:
AP Hello, I'm new to R
OK
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down by some chracteristics, the data to analize
can have 50'000-100'000 records
Well thank for the help
Anne
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analysis),
the (help)lda doesn't tell me either. Could anyone tell me where can I find
out this information as I am also interested in the method for qda?
Thanks
Anne
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for
example).
I have tried coef.lda which shows linear discriminant functions for
predictors but not groups. Meanwhile predict.lda only gives the case by
case posterior probabilities for each group and doesn't show predictors.
Can anyone please advise?
Anne
11 12
10 1 2 2
11 3 1 0
12 0 2 0
I believe there is also a package written especially to do analyses of runs
in data, but offhand, I don't recall the name of it.
Anne
~~~
Anne E. York
National Marine Mammal Laboratory
Seattle WA 98115-0070 USA
e
but to no avail. I wonder if you have
any suggestions?
Thanks alot,
Anne Marie Power
Marine lab.
Dept. Zooogy Animal Ecology,
University College Cork
Ireland
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))
~~~
Anne E. York
National Marine Mammal Laboratory
Seattle WA 98115-0070 USA
e-mail: [EMAIL PROTECTED]
Voice: +1 206-526-4039
Fax: +1 206-526-6615
~~~
Date: Mon, 24 Feb 2003 18:51:35 +0100
From: Uwe Ligges [EMAIL PROTECTED]
To: Marco Kienzle [EMAIL
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