setting $DYLD_LIBRARY_PATH, just in
case it mattered. It didn’t).
I’ll poke around some more.
Thanks.
William G. Scott
http://scottlab.ucsc.edu/~wgscott
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correctly hard-coded, and (in my case at least) I don’t have any other set of
libs for it to find.
Thanks.
Bill
William G. Scott
http://scottlab.ucsc.edu/~wgscott
--
Comprehensive Server Monitoring with Site24x7
for
improvements, please let me know.
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
University of California at Santa Cruz
Santa Cruz, California 95064
USA
http://scottlab.ucsc.edu/scottlab
On Oct 26, 2013, at 9:24 AM, David Hall li...@cowsandmilk.net wrote:
'm fairly confident this isn't a compiler problem, but a libc++ problem.
CXXFLAGS=-stdlib=libstdc++ cmake ..
gets you past the current problem. But if boost is built against libc++ , it
doesn't link, so I also built
On Oct 26, 2013, at 12:17 PM, William G. Scott wgsc...@ucsc.edu wrote:
On Oct 26, 2013, at 9:24 AM, David Hall li...@cowsandmilk.net wrote:
'm fairly confident this isn't a compiler problem, but a libc++ problem.
CXXFLAGS=-stdlib=libstdc++ cmake ..
gets you past the current problem
us, and I’m stuck.
Has anyone succeeded in getting rdkit compiled on 10.9, and if so, how?
Also, if anyone has feedback or recommendations for how to improve the fink
rdkit package, please let me know.
Thanks in advance.
Bill Scott
William G. Scott
Professor
Department of Chemistry
.
I have been able to build the rdkit with clang++ in the past without problems
and could certainly give that a try on a Linux box. Which version of clang
are you using?
What are you seeing for error messages when you try a build?
-greg
On 25 Oct 2013, at 18:43, William G. Scott wgsc
I've made a Fink package for OS X, if that helps. If you don't want to use
fink, it might still be of use to look at it.
http://fink.cvs.sourceforge.net/viewvc/fink/dists/10.7/stable/main/finkinfo/sci/rdkit.info?view=markup
HTH,
William G. Scott
Professor
Department of Chemistry
into the libraries after compiling.
You can see how I did it here:
http://fink.cvs.sourceforge.net/viewvc/fink/dists/10.7/stable/main/finkinfo/sci/rdkit.info?view=markup
Feel free to use any or all of it for making a macports package.
Bill
William G. Scott
Professor
Department of Chemistry and Biochemistry
On Feb 9, 2013, at 7:23 AM, Greg Landrum greg.land...@gmail.com wrote:
It certainly could be. I normally dynamically link against the boost
python lib. It's worth trying using the dynamically linked version and
seeing if it helps.
I will do that.
Out of curiosity, why did you decide
On Feb 9, 2013, at 8:10 AM, Greg Landrum greg.land...@gmail.com wrote:
On Sat, Feb 9, 2013 at 4:36 PM, William G. Scott wgsc...@ucsc.edu wrote:
Out of curiosity, why did you decide not to use whatever boost version
fink normally installs?
-greg
Fink has boost version 1.35, which I
On Feb 9, 2013, at 8:28 AM, Greg Landrum greg.land...@gmail.com wrote:
On Sat, Feb 9, 2013 at 5:13 PM, William G. Scott wgsc...@ucsc.edu wrote:
I suspect they wanted to migrate to boost.cmake. Will rdkit build with that
(I couldn't get it to work, but that doesn't mean a whole lot
this be the source of the error?)
Thanks in advance.
Bill
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
228 Sinsheimer Laboratories
University of California at Santa Cruz
Santa Cruz, California 95064
USA
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