Re: [spctools-discuss] Re: can not convert mzML from raw file

2010-11-09 Thread Matthew Chambers
These two statements seem to contradict each other: "I used this raw file on 32 bit system." "this file not working in our lab other 32 bit system." "Directory" is a synonym for "folder" so "same directory" means "same folder". The files msconvert.exe, MSFileReader.XRawfile.SxS.manifest, and

[spctools-discuss] Re: can not convert mzML from raw file

2010-11-09 Thread cnu106
I used this raw file on 32 bit system. Then this file is no problem. my old system is too slow, so I change new system. when i change system, I check TPP using this raw file. because, this file not working in our lab other 32 bit system. actually, I don't understand, why is not working on my system

Re: [spctools-discuss] Re: can not convert mzML from raw file

2010-11-09 Thread Matthew Chambers
You only get this crash when converting a RAW file? Perhaps it is the RAW file. Have you tried several different RAW files? It's not a 64-bit issue. My own machine is Windows 7 64-bit. -Matt On 11/9/2010 7:54 AM, jeong han kang wrote: Hi ! Matt sure, but still now working So, I asked about

[spctools-discuss] Re: can not convert mzML from raw file

2010-11-09 Thread Angel
As Matt mentioned, the 32-bit pwiz binaries will work fine. Just use that. -angel On Nov 9, 9:54 am, jeong han kang wrote: > Hi ! Matt > > sure, but still now working > So,  I asked about  new MSFileReader of 64 bit  to themo science. > Bu, I didn't get any response > > On Fri, Nov 5, 2010 at 11:

Re: [spctools-discuss] Re: can not convert mzML from raw file

2010-11-09 Thread jeong han kang
Hi ! Matt sure, but still now working So, I asked about new MSFileReader of 64 bit to themo science. Bu, I didn't get any response On Fri, Nov 5, 2010 at 11:00 PM, Matt Chambers wrote: > Did you extract ALL the files from the pwiz-bin package to the same > directory? > > -Matt > > > > On 11/5

Re: [spctools-discuss] Re: can not convert mzML from raw file

2010-11-08 Thread Matt Chambers
Did you extract ALL the files from the pwiz-bin package to the same directory? -Matt On 11/5/2010 8:40 PM, tgreco wrote: I was having same problem with msconvert as described above (on windows 7 64-bit). I installed MSfilereader and newest Proteowizard package (to tpp-bin) as suggested. But n

Re: [spctools-discuss] Re: can not convert mzML from raw file

2010-11-05 Thread Luis Mendoza
Hi Todd, This is most likely due to the Petunia's obsolete way to specify the centroiding option to msconvert. It should run just fine if you leave that off; I can send you a patch offline so that it works, or wait for our next release. Cheers, --Luis On Fri, Nov 5, 2010 at 6:40 PM, tgreco wrot

[spctools-discuss] Re: can not convert mzML from raw file

2010-11-05 Thread tgreco
I was having same problem with msconvert as described above (on windows 7 64-bit). I installed MSfilereader and newest Proteowizard package (to tpp-bin) as suggested. But now I receive a "Caught Unknown Exception" error: c:\Inetpub\tpp-bin\msconvert -v --mzML -o c:/Inetpub/wwwroot/ISB/data/ Tod

Re: [spctools-discuss] Re: can not convert mzML from raw file

2010-11-04 Thread Matthew Chambers
The only way to mix 32-bit and 64-bit native code is via IPC: http://social.msdn.microsoft.com/Forums/en/netfx64bit/thread/06176268-79b1-4b2b-a981-eba89b578949 http://www.dnjonline.com/article.aspx?id=jun07_access3264 -Matt On 11/4/2010 11:56 AM, Angel wrote: interesting. So if you have the x8

[spctools-discuss] Re: can not convert mzML from raw file

2010-11-04 Thread Angel
interesting. So if you have the x86_64 build, it won't fall back to using the system registered MSFileReader DLL (assuming msfilereader is independently installed)? -angel On Nov 3, 6:09 pm, Matthew Chambers wrote: > Windows x86 (not x86_64) is what you want. The 64-bit builds don't have > vend

Re: [spctools-discuss] Re: can not convert mzML from raw file

2010-11-03 Thread Matthew Chambers
Windows x86 (not x86_64) is what you want. The 64-bit builds don't have vendor support (their DLLs are 32-bit). Direct link: http://teamcity.labkey.org:8080/repository/download/bt36/21621:id/pwiz-bin-windows-x86-vc90-release-2_1_2351.tar.bz2?guest=1 Hope this helps, -Matt On 11/3/2010 11:31 AM

[spctools-discuss] Re: can not convert mzML from raw file

2010-11-03 Thread Angel
You should not need Bioworks. Try an updated version of Proteowizard: http://proteowizard.sourceforge.net/download.html Follow the "artifacts" link for windows x86_64 Will probably give you a login dialog, you can click on the "login as guest" link right below the form. Download the file calle