Re: [OMPI users] error openmpi check hdf5

On 02/10/2016 12:07 PM, Edgar Gabriel wrote: yes and no :-) That particular functions was fixed, but there are a few other especially in the shardefp framework that would cause similar problems if compiled without RTLD_GLOBAL. But more importantly, I can confirm that ompio in the 1.8 and 1.10

Re: [OMPI users] error openmpi check hdf5

yes and no :-) That particular functions was fixed, but there are a few other especially in the shardefp framework that would cause similar problems if compiled without RTLD_GLOBAL. But more importantly, I can confirm that ompio in the 1.8 and 1.10 series does *not* pass the HDF5 tests and

[OMPI users] error openmpi check hdf5

Edgar, It seems this the consequence of an abstraction violation (fcoll/two_phases directly calls the io/ompio component) and that was fixed in master. Can you confirm that ? Delphine, The problem should disappear if you use romio instead of ompio Cheers, Gilles On Wednesday, February 10,

Re: [OMPI users] error openmpi check hdf5

Delphine, I am surprised you are using ompio with openmpi 1.8 series. The default is to use romio Did you explicitly ask for ompio ? If not, can you check your environment and ensure you are not mixing openmpi 1.8 and v2.x ? Cheers, Gilles On Wednesday, February 10, 2016, Delphine Ramalingom <

Re: [OMPI users] error openmpi check hdf5

It's version 1.8.1. Regards Delphine *Delphine Ramalingom Barbary | Ingénieure en Calcul Scientifique * Direction des Usages du Numérique (DUN) Centre de Développement du Calcul Scientifique TEL : 02 62 93 84 87- FAX : 02 62 93 81 06 Le 10/02/2016 15:50, Edgar

Re: [OMPI users] error openmpi check hdf5

I have tested 1.8.5 and 1.10.2, both fail. (And Intel and Gnu compilers). Peter - Original Message - > which version of Open MPI is this? > Thanks > Edgar > On 2/10/2016 4:13 AM, Delphine Ramalingom wrote: > > Hello, > > > I try to compile a parallel version of hdf5. > > > I have

Re: [OMPI users] error openmpi check hdf5

which version of Open MPI is this? Thanks Edgar On 2/10/2016 4:13 AM, Delphine Ramalingom wrote: Hello, I try to compile a parallel version of hdf5. I have error messages when I check with openmpi. Support on HDF5 told me that the errors seem related to the new ompio implementation inside

[OMPI users] error openmpi check hdf5

Hello, I try to compile a parallel version of hdf5. I have error messages when I check with openmpi. Support on HDF5 told me that the errors seem related to the new ompio implementation inside open MPI for MPI-I/O. He suggests that I talk to the OMPI mailing list to resolve these errors.