Hi Amanda, The error message says:
running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" "c:/ Inetpub/wwwroot/ISB/data/18337.RAW_analysis_test/18337.pep.xml"" file 1: c:/Inetpub/wwwroot/ISB/data/18337.RAW_analysis_test/ 18337.pep.xml processed altogether 0 results This means there was a problem reading data from your pepXML file. Can you verify that your pepXML fie has spetrum_query tags? Thanks, -David On Mon, Dec 15, 2008 at 2:59 PM, Natalie Tasman <[email protected]> wrote: > Hello Amanda, > > Please try the latest release, 4.1.1 (November) instead of 4.0.2 (July), as > many bugs have been fixed. Perhaps this issue has already been addressed. > > Best wishes, > Natalie > > > On Mon, Dec 15, 2008 at 2:51 PM, Amanda <[email protected]> wrote: >> >> I'm trying to run Protein prophet but keep running into the same >> error. >> So far, I started with a .RAW file (290MB) and converted it to both >> mzXML (667Mb) and mzML (1GB). I then did a Database search and got >> the >> expected folder with .dta files (2852 files, 1-15KB each). I >> converted these to a .pep.xml file (3KB). The problem comes when I >> try to analyze with Peptide Prophet and Protein Prophet. I get the >> following files: interact.pep.xml, >> interact.pep.shtml,interact.pep.xsl, and interact.pep.xml.tmp.axxxxx. >> I then get the following error messages: >> -------------------------------------- >> Popup message: >> PeptideProphetParser.exe has encountered a problem and needs to >> close. We are sorry for the inconvenience. >> -------------------------------------- >> Error Signature: >> szAppName : PeptideProphetParser.exe szAppVer : 0.0.0.0 >> szModName : PeptideProphetParser.exe szModVer : 0.0.0.0 >> offset : 00019ec0 >> -------------------------------------- >> Error Report Contents: >> C:\DOCUME~1\AMANDA~1\LOCALS~1\Temp >> \WERb712.dir00\PeptideProphetParser.exe.mdmp >> C:\DOCUME~1\AMANDA~1\LOCALS~1\Temp\WERb712.dir00\appcompat.txt >> -------------------------------------- >> Log File/ Output Files: >> >> * c:/Inetpub/wwwroot/ISB/data/18337.RAW_analysis_test/ >> interact.pep.shtml [ View ] >> * c:/Inetpub/wwwroot/ISB/data/18337.RAW_analysis_test/ >> interact.prot.shtml (file not found: not created or deleted?) >> >> >> Command 1 [Tue Dec 9 09:33:43 2008] [ Show / Hide ] >> >> >> run_in c:/Inetpub/wwwroot/ISB/data/18337.RAW_analysis_test; >> xinteract -Ninteract.pep.xml -p0.05 -x20 -Op c:/Inetpub/wwwroot/ISB/ >> data/18337.RAW_analysis_test/18337.pep.xml >> >> >> xinteract (TPP v4.0 JETSTREAM rev 2, Build 200807011544 (MinGW)) >> >> >> running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" "c:/ >> Inetpub/wwwroot/ISB/data/18337.RAW_analysis_test/18337.pep.xml"" >> file 1: c:/Inetpub/wwwroot/ISB/data/18337.RAW_analysis_test/ >> 18337.pep.xml >> processed altogether 0 results >> >> >> results written to file c:/Inetpub/wwwroot/ISB/data/ >> 18337.RAW_analysis_test/interact.pep.xml >> >> >> direct your browser to >> http://localhost/ISB/data/18337.RAW_analysis_test/interact.pep.shtml >> >> >> command completed in 1 sec >> >> >> running: "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" >> MINPROB=0.05 EXTRAITRS=20" >> (SEQUEST) >> MS Instrument info: Manufacturer: UNKNOWN, Model: UNKNOWN, >> Ionization: >> UNKNOWN, Analyzer: UNKNOWN, Detector: UNKNOWN >> >> >> command "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" >> MINPROB=0.05 EXTRAITRS=20" failed: Unknown error >> >> >> command "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" >> MINPROB=0.05 EXTRAITRS=20" exited with non-zero exit code: >> -1073741819 >> QUIT - the job is incomplete >> >> >> Command FAILED >> >> >> >> > > > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
