That doesn't make any difference. On Aug 27, 8:12 pm, "Brian Pratt" <brian.pr...@insilicos.com> wrote: > Yeah, that's what we use here too. Perhaps you could try it as a different, > newly created user? It sounds like there is something peculiar about your > shell setup. > > -----Original Message----- > From: spctools-discuss@googlegroups.com > > [mailto:spctools-disc...@googlegroups.com] On Behalf Of Eliza > Sent: Thursday, August 27, 2009 12:13 AM > To: spctools-discuss > Subject: [spctools-discuss] Re: Failure with make > > Bash > > On Aug 20, 11:55 pm, "Brian Pratt" <brian.pr...@insilicos.com> wrote: > > We basically tried that already: Eliza says the suggested > > > export PWD=/opt/trans_proteomic_pipeline/src ; make all install > > > did not work. She also tried the "SRC_ROOT= $(shell pwd)" change to the > > makefile. There's something deeper going on. > > > Eliza, what shell do you use? I do see from googling that $PWD might be > > bash-specific, possibly there are other unintended bash dependencies. > > > Brian > > > -----Original Message----- > > From: spctools-discuss@googlegroups.com > > > [mailto:spctools-disc...@googlegroups.com] On Behalf Of Mike Coleman > > Sent: Thursday, August 20, 2009 1:26 PM > > To: spctools-discuss > > Subject: [spctools-discuss] Re: Failure with make > > > Eliza, > > > I'm still suspicious about the $PWD thing. If you're running 'make' > > normally, you might try something like > > > $ PWD=$(pwd) make ... > > > instead of just > > > $ make ... > > > to see whether that improves your situation. Alternatively, for the > > 'root' steps, you could do something like > > > $ sudo PWD=$(pwd) make ... > > > Mike
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