Okay, if you really want to bring out the big guns, do something like
this
$ strace -f -s 1024 -v -o make.strace make
and put the resulting 'make.strace' log somewhere where we can look at
it. I think this is erroring out pretty quickly, so hopefully that
log won't be too huge. No promises, but this may very well clarify
what's going wrong.
You'll have to install the strace package if it's not already present.
Mike
On Aug 28, 4:59 am, Eliza <blond...@googlemail.com> wrote:
> That doesn't make any difference.
>
> On Aug 27, 8:12 pm, "Brian Pratt" <brian.pr...@insilicos.com> wrote:
>
> > Yeah, that's what we use here too. Perhaps you could try it as a different,
> > newly created user? It sounds like there is something peculiar about your
> > shell setup.
>
> > -----Original Message-----
> > From: spctools-discuss@googlegroups.com
>
> > [mailto:spctools-disc...@googlegroups.com] On Behalf Of Eliza
> > Sent: Thursday, August 27, 2009 12:13 AM
> > To: spctools-discuss
> > Subject: [spctools-discuss] Re: Failure with make
>
> > Bash
>
> > On Aug 20, 11:55 pm, "Brian Pratt" <brian.pr...@insilicos.com> wrote:
> > > We basically tried that already: Eliza says the suggested
>
> > > export PWD=/opt/trans_proteomic_pipeline/src ; make all install
>
> > > did not work. She also tried the "SRC_ROOT= $(shell pwd)" change to the
> > > makefile. There's something deeper going on.
>
> > > Eliza, what shell do you use? I do see from googling that $PWD might be
> > > bash-specific, possibly there are other unintended bash dependencies.
>
> > > Brian
>
> > > -----Original Message-----
> > > From: spctools-discuss@googlegroups.com
>
> > > [mailto:spctools-disc...@googlegroups.com] On Behalf Of Mike Coleman
> > > Sent: Thursday, August 20, 2009 1:26 PM
> > > To: spctools-discuss
> > > Subject: [spctools-discuss] Re: Failure with make
>
> > > Eliza,
>
> > > I'm still suspicious about the $PWD thing. If you're running 'make'
> > > normally, you might try something like
>
> > > $ PWD=$(pwd) make ...
>
> > > instead of just
>
> > > $ make ...
>
> > > to see whether that improves your situation. Alternatively, for the
> > > 'root' steps, you could do something like
>
> > > $ sudo PWD=$(pwd) make ...
>
> > > Mike
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