Hi Vishal, Thank you for your continuous support. I am not in a great hurry to have TPP working so you do not need to place this in your priority. I have explored those websites and they all seemed like a foreign language to me. I modified my httpd.conf according to website a) and it denied access to my test.cgi located in Apache's cgi-bin folder so I decided to revert the httpd.conf back to original. As I mentioned earlier, I was able to create and run "test.cgi" from website b) with no problem. Website c) mentioned something about changing the permission to 0755 with WS_FTP. I have downloaded that software and was unable to utilitze the software. Here is an excerpt of what seems to be the main problem from error.log:
[Thu Nov 10 13:47:08 2011] [error] [client 127.0.0.1] Premature end of script headers: PepXMLViewer.cgi, referer: http://localhost:8080/tpp-bin/tpp_gui.pl?Action=display&page=filebrowser&file_ext=*&workdir=c:/Inetpub/wwwroot/ISB/data/demo2009//tandem [Thu Nov 10 13:58:41 2011] [warn] pid file C:/Program Files/Apache Software Foundation/Apache2.2/logs/httpd.pid overwritten -- Unclean shutdown of previous Apache run? The "premature end of script" part shows up constantly as I browse through the error log. I think it is directly related to the reason that I am unable to open my .xml files in Pep3D. I will try to explore other options meanwhile. Thanks again. Best Regards, Chris On Nov 10, 10:42 am, Vishal Swaroop <vishal....@gmail.com> wrote: > Hi Chis, > > I understand... it is frustrating... I will try it during week-end... > > I am sure you have tried many things... it will be nice if you can check > these posts : > *a) Refer last part* > *http://www.linuxquestions.org/questions/linux-software-2/apache-cgi-p... > *<http://www.linuxquestions.org/questions/linux-software-2/apache-cgi-p...> > > b)http://encodable.com/internal_server_error/ > > c)http://support.discusware.com/center/resources/errors/500ftpdiag.html > > Other things which I would re-check is httpd.conf settings > Check what is printed in apache server error when you get Internal server > error. > > Thanks > Vishal > > On Wed, Nov 9, 2011 at 2:12 PM, Chris L <linci%uci....@gtempaccount.com>wrote: > > > > > > > > > Dear all, > > > Sorry for reposting the thread, but I am still having trouble > > accessing Pep3D and some other features of TPP, namely the ones that > > allow me to view my output xml files. I am running Windows XP Service > > Pack 3, TPP v4.5 RAPTURE rev 0, Apache 2.2.21 (win32), and ActivePerl > > 5.14.2. I am trying to do the TPP Demo 2009 (http:// > > tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009) in the > > link provided. Here is a screenshot I get from trying to open > > interact.pep.xml at step 7 "Visualize LC-MS/MS data using Pep3D" using > > TPP's browse feature: > > >http://farm7.static.flickr.com/6175/6264549557_34f25c2dc0_b.jpg > > > This problem occurs for xml files and several other types of output > > files generated by TPP. However, I can view the output file > > "interact.prot.shtml" in step 10: "Protein-level validation with > > ProteinProphet" with no problem (http://farm7.static.flickr.com/ > > 6104/6329812226_e184aae1d8_b.jpg). The person previously in charge of > > TPP is no longer working for the lab and could not be reached (his > > email is written on the 500 internal server error screenshot which I > > whited out), and it appears some of the settings he did may be corrupt > > (Apache, Perl, etc). I do not specialize in computing or engineering > > so I have no clue how to adjust this. Any suggestion is appreciated. > > Thank you. > > > ps. Thanks to Vishal and a few other people for trying to help me in > > the past few weeks. > > > Best Regards, > > Chris > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To post to this group, send email to spctools-discuss@googlegroups.com. > > To unsubscribe from this group, send email to > > spctools-discuss+unsubscr...@googlegroups.com. > > For more options, visit this group at > >http://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
