Hi, Henry, I have the same problem. I use the the Comet to do the search, and when I use Libra function in peptide analysis module, I got this message:
Error ms2 filter line: I don't really know what causes this, anyone in TPP team know how to solve this? SunSun On Sunday, March 29, 2015 at 8:10:34 AM UTC+8, Henry RodrÃguez wrote: > > Hi, > > I am performing a quantification of my data with Libra software. However, > I always obtain a error. My original spectra are in *MGF format*, so I > convert them to mzML with MSConvert software of Proteowizard with different > filters, but this does not functioned. Also, I have tried use the > ScanRanker software which filter for quality the spectra ( > http://fenchurch.mc.vanderbilt.edu/bumbershoot/scanranker/index.html), > but this also does not functioned. The error that I have obtained is the > following. Thanks for your help with this error, > > Henry. > > > > Analyzing interact_rawdata280315.pep.xml ... > Parsing search results > "c:/Inetpub/wwwroot/ISB/data/Rawdata_Peakpicking2/PAIV141024_1 (X! Tandem > (k-score))"... > => Found 34 hits. (0 decoys, 0 excluded) > => Total so far: 34 hits. (0 decoys, 0 excluded) > Parsing search results > "c:/Inetpub/wwwroot/ISB/data/Rawdata_Peakpicking2/PAIV141024_2 (X! Tandem > (k-score))"... > => Found 68 hits. (0 decoys, 0 excluded) > => Total so far: 102 hits. (0 decoys, 0 excluded) > El sistema no puede encontrar la ruta especificada. > command completed in 1 sec > > running: "C:/Inetpub/tpp-bin/LibraPeptideParser > "interact_rawdata280315.pep.xml" -ccondition.xml" > Error ms2 filter line: > > > command "C:/Inetpub/tpp-bin/LibraPeptideParser > "interact_rawdata280315.pep.xml" -ccondition.xml" failed: Operation not > permitted > > command "C:/Inetpub/tpp-bin/LibraPeptideParser > "interact_rawdata280315.pep.xml" -ccondition.xml" exited with non-zero exit > code: 1 > QUIT - the job is incomplete > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
