Javan, This implies the Comet search has not run. How are you attempting to running Comet? You mention searchGUI in your title ... are you using the TPP to run Comet or CometOmic's SearchGUI?
Jimmy On Mon, Apr 13, 2020 at 10:27 AM JAVAN OKENDO <javanoke...@gmail.com> wrote: > I get the following error even though my mzML raw files are in the "Data" > dir. Why is the program complaining about the .pepXML not found and yet am > doing the comet search? I am stuck and I disparately need your assistance > > - c:/Data/170909_CH_C1_T006_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T007_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T009_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T010_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T011_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T013_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T014_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T015_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T025_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T026_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T027_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T037_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T042_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T049_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T051_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T052_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T053_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T054_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T061_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T062_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T064_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T069_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T073_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T075_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T077_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T080_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T084_FT_R2.pep.xml (*file not found:* not > created or deleted? > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/aa0607da-e037-4a8c-a94f-4bbfb5eab0e8%40googlegroups.com > <https://groups.google.com/d/msgid/spctools-discuss/aa0607da-e037-4a8c-a94f-4bbfb5eab0e8%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CAJqD6EPk%3DzDb1yZPzAXMoDSCwH7mtNYWeMRiiy66R-A6j3Zx3Q%40mail.gmail.com.
