The TPP is complaining about the parameter file: Comet version 2018.01 rev. 4
The comet.params file is from version 2019.01 Please update your comet.params file. You can generate a new parameters file using "comet -p" I think TPP runs comet 2018.01 and my parameter file was generated using comet 2019.01 On Monday, April 13, 2020 at 7:27:44 PM UTC+2, JAVAN OKENDO wrote: > > I get the following error even though my mzML raw files are in the "Data" > dir. Why is the program complaining about the .pepXML not found and yet am > doing the comet search? I am stuck and I disparately need your assistance > > - c:/Data/170909_CH_C1_T006_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T007_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T009_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T010_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T011_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T013_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T014_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T015_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T025_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T026_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T027_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T037_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T042_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T049_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T051_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T052_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T053_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T054_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T061_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T062_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T064_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T069_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T073_FT_R2.pep.xml (*file not found:* not > created or deleted?) > - c:/Data/170909_CH_C1_T075_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T077_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T080_FT.pep.xml (*file not found:* not created > or deleted?) > - c:/Data/170909_CH_C1_T084_FT_R2.pep.xml (*file not found:* not > created or deleted? > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/2d0c76c0-4aac-4817-8094-b4113777eec2%40googlegroups.com.
