Hi, How are you attempting to running Comet? I am running this data using the TPP program.
The program gives this message Comet version 2018.01 rev. 4 The comet.params file is from version 2019.01 Please update your comet.params file. You can generate a new parameters file using "comet -p" On Mon, Apr 13, 2020 at 7:40 PM Jimmy Eng <jke...@gmail.com> wrote: > Javan, > > This implies the Comet search has not run. How are you attempting to > running Comet? You mention searchGUI in your title ... are you using the > TPP to run Comet or CometOmic's SearchGUI? > > Jimmy > > On Mon, Apr 13, 2020 at 10:27 AM JAVAN OKENDO <javanoke...@gmail.com> > wrote: > >> I get the following error even though my mzML raw files are in the "Data" >> dir. Why is the program complaining about the .pepXML not found and yet am >> doing the comet search? I am stuck and I disparately need your assistance >> >> - c:/Data/170909_CH_C1_T006_FT.pep.xml (*file not found:* not created >> or deleted?) >> - c:/Data/170909_CH_C1_T007_FT_R2.pep.xml (*file not found:* not >> created or deleted?) >> - c:/Data/170909_CH_C1_T009_FT.pep.xml (*file not found:* not created >> or deleted?) >> - c:/Data/170909_CH_C1_T010_FT_R2.pep.xml (*file not found:* not >> created or deleted?) >> - c:/Data/170909_CH_C1_T011_FT_R2.pep.xml (*file not found:* not >> created or deleted?) >> - c:/Data/170909_CH_C1_T013_FT.pep.xml (*file not found:* not created >> or deleted?) >> - c:/Data/170909_CH_C1_T014_FT_R2.pep.xml (*file not found:* not >> created or deleted?) >> - c:/Data/170909_CH_C1_T015_FT.pep.xml (*file not found:* not created >> or deleted?) >> - c:/Data/170909_CH_C1_T025_FT.pep.xml (*file not found:* not created >> or deleted?) >> - c:/Data/170909_CH_C1_T026_FT.pep.xml (*file not found:* not created >> or deleted?) >> - c:/Data/170909_CH_C1_T027_FT_R2.pep.xml (*file not found:* not >> created or deleted?) >> - c:/Data/170909_CH_C1_T037_FT.pep.xml (*file not found:* not created >> or deleted?) >> - c:/Data/170909_CH_C1_T042_FT.pep.xml (*file not found:* not created >> or deleted?) >> - c:/Data/170909_CH_C1_T049_FT.pep.xml (*file not found:* not created >> or deleted?) >> - c:/Data/170909_CH_C1_T051_FT_R2.pep.xml (*file not found:* not >> created or deleted?) >> - c:/Data/170909_CH_C1_T052_FT.pep.xml (*file not found:* not created >> or deleted?) >> - c:/Data/170909_CH_C1_T053_FT.pep.xml (*file not found:* not created >> or deleted?) >> - c:/Data/170909_CH_C1_T054_FT.pep.xml (*file not found:* not created >> or deleted?) >> - c:/Data/170909_CH_C1_T061_FT_R2.pep.xml (*file not found:* not >> created or deleted?) >> - c:/Data/170909_CH_C1_T062_FT_R2.pep.xml (*file not found:* not >> created or deleted?) >> - c:/Data/170909_CH_C1_T064_FT_R2.pep.xml (*file not found:* not >> created or deleted?) >> - c:/Data/170909_CH_C1_T069_FT_R2.pep.xml (*file not found:* not >> created or deleted?) >> - c:/Data/170909_CH_C1_T073_FT_R2.pep.xml (*file not found:* not >> created or deleted?) >> - c:/Data/170909_CH_C1_T075_FT.pep.xml (*file not found:* not created >> or deleted?) >> - c:/Data/170909_CH_C1_T077_FT.pep.xml (*file not found:* not created >> or deleted?) >> - c:/Data/170909_CH_C1_T080_FT.pep.xml (*file not found:* not created >> or deleted?) >> - c:/Data/170909_CH_C1_T084_FT_R2.pep.xml (*file not found:* not >> created or deleted? >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools-discuss+unsubscr...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/spctools-discuss/aa0607da-e037-4a8c-a94f-4bbfb5eab0e8%40googlegroups.com >> <https://groups.google.com/d/msgid/spctools-discuss/aa0607da-e037-4a8c-a94f-4bbfb5eab0e8%40googlegroups.com?utm_medium=email&utm_source=footer> >> . >> > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/CAJqD6EPk%3DzDb1yZPzAXMoDSCwH7mtNYWeMRiiy66R-A6j3Zx3Q%40mail.gmail.com > <https://groups.google.com/d/msgid/spctools-discuss/CAJqD6EPk%3DzDb1yZPzAXMoDSCwH7mtNYWeMRiiy66R-A6j3Zx3Q%40mail.gmail.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CAGdnHmveXWFvWgk7v6tsEE7j9UJLxuOphNtV%2BkVmy1f8HKxN8w%40mail.gmail.com.
