That worked perfectly. Thank You. Now I know that Transeq is the one I
actually need to use. You saved my days :) What about BioJava in taverna?
I found another way http://biojava.org/wiki/BioJava:Cookbook:Translation to
translate to protein with BioJava which is a lot simpler.
This workflow http://www.myexperiment.org/workflows/1583 which uses BioJava
for Transcribe_DNA BeanshellScript gives following error.
- Processor 'Transcribe_DNA' - Port 'rna_seq' : Line 6: Sourced file:
inline evaluation of: ``import org.biojava.bio.seq.DNATools; import
org.biojava.bio.seq.RNATools; import . . . '' : Typed variable declaration
: Class: SymbolList not found in namespace
This error is also listed here
http://dev.mygrid.org.uk/wiki/display/developer/Taverna+2.5+old+testing
I have put all .jar from BioJava in the lib folder
(C:\Users\Desi\AppData\Roaming\taverna-enterprise-2.5.0\lib)
and selected all of them in Dependencies tab in BeanShell editor. But
On Thu, Jul 17, 2014 at 2:15 PM, Alan R Williams <
[email protected]> wrote:
> If transeq is OK for you, can you try the attached workflow?
>
> Alan
>
>
>
> ------------------------------------------------------------------------------
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>
>
--
Muhammad Usama
2011-NUST-MS-CS-009
------------------------------------------------------------------------------
Want fast and easy access to all the code in your enterprise? Index and
search up to 200,000 lines of code with a free copy of Black Duck
Code Sight - the same software that powers the world's largest code
search on Ohloh, the Black Duck Open Hub! Try it now.
http://p.sf.net/sfu/bds
_______________________________________________
taverna-users mailing list
[email protected]
[email protected]
Web site: http://www.taverna.org.uk
Mailing lists: http://www.taverna.org.uk/about/contact-us/
