On 18/07/2014 02:22, Muhammad Usama wrote: > Thank you very much. That worked like a charm. Simply reverting back to > 1.7.1 like your example made it work. I was using BioJava 3.0.8.
That's what I initially tried. The local services were probably removed from Taverna because they were out-of-date. > Now > when I see the api, all methods are changed. translate() is replaced > with getProteinSequence() etc. > * > * > My protein output is a little different from > http://translate-protein.com/ (Frame 1) and > http://web.expasy.org/translate/ (Frame 1). > Outputs comparison: http://www.diffnow.com/?report=sd9t4 > > Should I use the new version or should use another method > http://biojava.org/wiki/BioJava:Cookbook:Translation:SixFrames I think you will have to ask the developers of BioJava as to which methods to use. Alan ------------------------------------------------------------------------------ Want fast and easy access to all the code in your enterprise? Index and search up to 200,000 lines of code with a free copy of Black Duck Code Sight - the same software that powers the world's largest code search on Ohloh, the Black Duck Open Hub! Try it now. http://p.sf.net/sfu/bds _______________________________________________ taverna-users mailing list [email protected] [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/about/contact-us/
