So the issue was in Neo and not Neoclipse? If so, is this a recommended patch for everyone running Neo 1.2 who might encounter a recovery/restart situation, or is this something specific to a Neoclipse issue?
Thanks, Rick -----Original Message----- From: user-boun...@lists.neo4j.org [mailto:user-boun...@lists.neo4j.org] On Behalf Of Anders Nawroth Sent: Monday, January 17, 2011 4:10 PM To: Neo4j user discussions Subject: Re: [Neo4j] Unfinished transaction - cannot open db Hi! 2011-01-17 20:42, Andreas Bauer: > Great! Thanks alot! Let me know when and where I can download the update! The snapshot version of the download package is found here: http://neo4j.org/get?file=neo4j-1.3-SNAPSHOT-unix.tar.gz http://neo4j.org/get?file=neo4j-1.3-SNAPSHOT-windows.zip /anders > > Cheers, > > Andi > > Am 17.01.2011 um 10:03 schrieb Mattias Persson: > >> Hi again and sorry for late response, >> >> This has been some nut to crack, but finally I think the bug is resolved. >> It's committed and will be available in the next milestone, but is already >> available (at least within the next hour or so) in SNAPSHOT builds from the >> neo4j maven repository. >> >> I'd like to thank you for being persistent in giving back information and >> being very helpful! >> >> If the issue is still there please report back. >> >> >> Best, >> Mattias >> >> 2011/1/14 Andreas Bauer<b...@gmx.net> >> >>> Hi, >>> >>> on the classpath are the libs that come with neoclipse, so geronimo and >>> all the neo4j-libs including neo4j-lucene-index-0.2-1.2.jar. >>> >>> When I start the database in neoclipse the following messages are written: >>> >>> Jan 14 18:17:02 CET 2011: XaResourceManager[./nioneo_logical.log] sorting 0 >>> xids >>> Fri Jan 14 18:17:02 CET 2011: XaResourceManager[./nioneo_logical.log] >>> checkRecoveryComplete 0 xids >>> Fri Jan 14 18:17:02 CET 2011: ./neostore.relationshiptypestore.db.names >>> rebuild id generator, highId=5 defragged count=0 >>> Fri Jan 14 18:17:02 CET 2011: ./neostore.propertystore.db.index.keys >>> rebuild id generator, highId=3 defragged count=0 >>> Fri Jan 14 18:17:02 CET 2011: ./neostore.propertystore.db.index rebuild id >>> generator, highId=2 defragged count=0 >>> Fri Jan 14 18:17:03 CET 2011: ./neostore.propertystore.db.strings rebuild >>> id generator, highId=1788 defragged count=0 >>> Fri Jan 14 18:17:03 CET 2011: ./neostore.propertystore.db.arrays rebuild id >>> generator, highId=1 defragged count=0 >>> Fri Jan 14 18:17:03 CET 2011: ./neostore.propertystore.db rebuild id >>> generator, highId=2924 defragged count=0 >>> Fri Jan 14 18:17:03 CET 2011: ./neostore.relationshipstore.db rebuild id >>> generator, highId=1137 defragged count=0 >>> Fri Jan 14 18:17:03 CET 2011: ./neostore.nodestore.db rebuild id generator, >>> highId=2019 defragged count=0 >>> Fri Jan 14 18:17:03 CET 2011: ./neostore rebuild id generator, highId=4 >>> defragged count=0 >>> Fri Jan 14 18:17:03 CET 2011: XaResourceManager[./nioneo_logical.log] >>> recovery completed. >>> Fri Jan 14 18:17:03 CET 2011: Recovery on log [./nioneo_logical.log.1] >>> completed. >>> Fri Jan 14 18:17:03 CET 2011: Non clean shutdown detected on log >>> [./lucene/lucene.log.1]. Recovery started ... >>> Fri Jan 14 18:17:03 CET 2011: [./lucene/lucene.log.1] logVersion=0 with >>> committed tx=1 >>> Fri Jan 14 18:17:03 CET 2011: [./lucene/lucene.log.1] entries found=0 >>> lastEntryPos=16 >>> Fri Jan 14 18:17:03 CET 2011: XaResourceManager[./lucene/lucene.log] >>> sorting 0 xids >>> Fri Jan 14 18:17:03 CET 2011: XaResourceManager[./lucene/lucene.log] >>> checkRecoveryComplete 0 xids >>> Fri Jan 14 18:17:03 CET 2011: XaResourceManager[./lucene/lucene.log] >>> recovery completed. >>> Fri Jan 14 18:17:03 CET 2011: Recovery on log [./lucene/lucene.log.1] >>> completed. >>> Fri Jan 14 18:17:03 CET 2011: Non clean shutdown detected on log >>> [./lucene-fulltext/lucene.log.1]. Recovery started ... >>> Fri Jan 14 18:17:03 CET 2011: [./lucene-fulltext/lucene.log.1] logVersion=0 >>> with committed tx=1 >>> Fri Jan 14 18:17:03 CET 2011: [./lucene-fulltext/lucene.log.1] entries >>> found=0 lastEntryPos=16 >>> Fri Jan 14 18:17:04 CET 2011: >>> XaResourceManager[./lucene-fulltext/lucene.log] sorting 0 xids >>> Fri Jan 14 18:17:04 CET 2011: >>> XaResourceManager[./lucene-fulltext/lucene.log] checkRecoveryComplete 0 xids >>> Fri Jan 14 18:17:04 CET 2011: >>> XaResourceManager[./lucene-fulltext/lucene.log] recovery completed. >>> Fri Jan 14 18:17:04 CET 2011: Recovery on log >>> [./lucene-fulltext/lucene.log.1] completed. >>> Fri Jan 14 18:17:04 CET 2011: Non clean shutdown detected on log >>> [./index/lucene.log.1]. Recovery started ... >>> Fri Jan 14 18:17:04 CET 2011: [./index/lucene.log.1] logVersion=0 with >>> committed tx=1 >>> Fri Jan 14 18:17:04 CET 2011: Injected one phase commit, txId=2 >>> Fri Jan 14 18:17:04 CET 2011: Injected one phase commit, txId=3 >>> Fri Jan 14 18:17:04 CET 2011: Injected one phase commit, txId=4 >>> Fri Jan 14 18:17:04 CET 2011: Injected two phase commit, txId=5 >>> Fri Jan 14 18:17:04 CET 2011: Injected two phase commit, txId=6 >>> Fri Jan 14 18:17:04 CET 2011: Failed to init extension >>> org.neo4j.graphdb.index.IndexProvider[lucene] Could not create data source >>> lucene-index[lucene-index] >>> org.neo4j.graphdb.TransactionFailureExtion: Could not create data source >>> lucene-index[lucene-index] >>> at >>> org.neo4j.kernel.impl.transaction.TxModule.registerDataSource(TxModule.java: 182) >>> at >>> org.neo4j.index.impl.lucene.LuceneIndexProvider.load(LuceneIndexProvider.jav a:110) >>> at >>> org.neo4j.index.impl.lucene.LuceneIndexProvider.init(LuceneIndexProvider.jav a:94) >>> at >>> org.neo4j.kernel.KernelExtension$KernelData.initAll(KernelExtension.java:153 ) >>> at >>> org.neo4j.kernel.EmbeddedGraphDbImpl$2.init(EmbeddedGraphDbImpl.java:160) >>> at org.neo4j.kernel.GraphDbInstance.start(GraphDbInstance.java:155) >>> at >>> org.neo4j.kernel.EmbeddedGraphDbImpl.<init>(EmbeddedGraphDbImpl.java:168) >>> at >>> org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:81) >>> at >>> org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:65) >>> at >>> org.neo4j.neoclipse.graphdb.GraphDbServiceManager$Tasks$1.run(GraphDbService Manager.java:79) >>> at >>> java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) >>> at >>> java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) >>> at java.util.concurrent.FutureTask.run(FutureTask.java:138) >>> at >>> java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.ja va:886) >>> at >>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:9 08) >>> at java.lang.Thread.run(Thread.java:680) >>> Caused by: java.lang.reflect.InvocationTargetExtion >>> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native >>> Method) >>> at >>> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAcces sorImpl.java:39) >>> at >>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstruc torAccessorImpl.java:27) >>> at java.lang.reflect.Constructor.newInstance(Constructor.java:513) >>> at >>> org.neo4j.kernel.impl.transaction.XaDataSourceManager.create(XaDataSourceMan ager.java:74) >>> at >>> org.neo4j.kernel.impl.transaction.TxModule.registerDataSource(TxModule.java: 176) >>> ... 15 more >>> Caused by: java.lang.NullPointerExtion >>> at >>> org.neo4j.index.impl.lucene.LuceneDataSource.findDocument(LuceneDataSource.j ava:602) >>> at >>> org.neo4j.index.impl.lucene.CommitContext.getDocument(CommitContext.java:71) >>> at >>> org.neo4j.index.impl.lucene.LuceneCommand$AddRelationshipCommand.perform(Luc eneCommand.java:212) >>> at >>> org.neo4j.index.impl.lucene.LuceneTransaction.doCommit(LuceneTransaction.jav a:231) >>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaTransaction.commit(XaTransac tion.java:319) >>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.injectTwoPha seCommit(XaResourceManager.java:380) >>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyTwoPhaseComm itEntry(XaLogicalLog.java:577) >>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyEntry(XaLogi calLog.java:469) >>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.doInternalRecover y(XaLogicalLog.java:804) >>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog .java:274) >>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog .java:197) >>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaContainer.openLogicalLog(XaC ontainer.java:98) >>> at >>> org.neo4j.index.impl.lucene.LuceneDataSource.<init>(LuceneDataSource.java:20 7) >>> ... 21 more >>> Fri Jan 14 18:17:04 CET 2011: Extension >>> org.neo4j.kernel.KernelExtension[shell] initialized ok >>> Fri Jan 14 18:17:04 CET 2011: Extension >>> org.neo4j.kernel.KernelExtension[kernel udc] initialized ok >>> Fri Jan 14 18:17:04 CET 2011: Extension >>> org.neo4j.kernel.KernelExtension[kernel jmx] initialized ok >>> Fri Jan 14 18:17:04 CET 2011: TM opening log: ./tm_tx_log.2 >>> Fri Jan 14 18:17:04 CET 2011: TM non resolved transactions found in >>> ./tm_tx_log.2 >>> >>> >>> >>> Am 14.01.2011 um 09:59 schrieb Johan Svensson: >>> >>>> Hi, >>>> >>>> Could you provide a list of what jar files are on the classpath. >>>> Information in the<db-dir>/messages.log printed during startup would >>>> also be interesting to see. >>>> >>>> -Johan >>>> >>>> On Thu, Jan 13, 2011 at 9:23 PM, Andreas Bauer<b...@gmx.net> wrote: >>>>> Hi, >>>>> >>>>> now I got neoclipse running from eclipse, finally :) (BTW: adding -d32 >>> to the VM arguments in the run configuration and copying the jnilib from >>> org.eclipse.swt.cocoa.macosx does the trick) >>>>> >>>>> But when I start my database I get this error: >>>>> >>>>> org.neo4j.graphdb.TransactionFailureException: No mapping found for >>> branchId [0x162374]: No mapping found for branchId [0x162374] >>>>> >>>>> Hmm, so how do I manage to clean up the database? shutdown() won't do >>> nor the source built neoclipse... any hints? >>>>> >>>>> Regards, >>>>> >>>>> Andi >>>>> >>>>> >>>>> Am 13.01.2011 um 20:36 schrieb Andreas Bauer: >>>>> >>>>>> Hi, >>>>>> >>>>>> the stack trace below wasn't generated by neoclipse, but by neo4j, when >>> I tried to run the shutdown() method. >>>>>> >>>>>> Regarding the hint build neo4j from source. Up to now I'm still >>> struggling with getting neoclipse run from source code on my Mac ( I'm just >>> dealing with the 32bit 64bit issue. >>> http://www.eclipse.org/swt/faq.php#cocoa64launch, which makes me quite >>> upset, as it additionally wastes lots of time.) So I can't say, if that >>> helped... >>>>>> >>>>>> Cheers, >>>>>> >>>>>> Andi >>>>>> >>>>>> >>>>>> Am 12.01.2011 um 23:26 schrieb Andreas Bauer: >>>>>> >>>>>>> Hi, >>>>>>> >>>>>>> I use the latest stable version for mac available on the neo4j >>> homepage (V1.2). And no, I didn't delete anything. >>>>>>> >>>>>>> Regards, >>>>>>> >>>>>>> Andi >>>>>>> >>>>>>> >>>>>>> Am 12.01.2011 um 22:52 schrieb Michael Hunger: >>>>>>> >>>>>>>> Hi Andi, >>>>>>>> >>>>>>>> what version of neo4j are you running against? The latest 1.2 or sth >>> else? >>>>>>>> >>>>>>>> And did you delete any of the files of the database? >>>>>>>> >>>>>>>> Thanks a lot >>>>>>>> >>>>>>>> Michael >>>>>>>> >>>>>>>> Am 12.01.2011 um 21:10 schrieb Andreas Bauer: >>>>>>>> >>>>>>>>> Hi, >>>>>>>>> >>>>>>>>> ok, I did that and now I get this stack trace >>>>>>>>> >>>>>>>>> 12.01.2011 21:04:57 >>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog >>> doInternalRecovery >>>>>>>>> INFO: Non clean shutdown detected on log [cep/nioneo_logical.log.1]. >>> Recovery started ... >>>>>>>>> 12.01.2011 21:05:01 >>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog >>> doInternalRecovery >>>>>>>>> INFO: Non clean shutdown detected on log [cep/lucene/lucene.log.1]. >>> Recovery started ... >>>>>>>>> 12.01.2011 21:05:01 >>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog >>> doInternalRecovery >>>>>>>>> INFO: Non clean shutdown detected on log >>> [cep/lucene-fulltext/lucene.log.1]. Recovery started ... >>>>>>>>> 12.01.2011 21:05:01 >>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog >>> doInternalRecovery >>>>>>>>> INFO: Non clean shutdown detected on log >>> [/Users/buki/Documents/workspace/Pimstr/cep/index/lucene.log.1]. Recovery >>> started ... >>>>>>>>> org.neo4j.graphdb.TransactionFailureException: Could not create data >>> source lucene-index[lucene-index] >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.TxModule.registerDataSource(TxModule.java: 182) >>>>>>>>> at >>> org.neo4j.index.impl.lucene.LuceneIndexProvider.load(LuceneIndexProvider.jav a:110) >>>>>>>>> at >>> org.neo4j.index.impl.lucene.LuceneIndexProvider.init(LuceneIndexProvider.jav a:94) >>>>>>>>> at >>> org.neo4j.kernel.KernelExtension$KernelData.initAll(KernelExtension.java:153 ) >>>>>>>>> at >>> org.neo4j.kernel.EmbeddedGraphDbImpl$2.init(EmbeddedGraphDbImpl.java:160) >>>>>>>>> at >>> org.neo4j.kernel.GraphDbInstance.start(GraphDbInstance.java:155) >>>>>>>>> at >>> org.neo4j.kernel.EmbeddedGraphDbImpl.<init>(EmbeddedGraphDbImpl.java:168) >>>>>>>>> at >>> org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:81) >>>>>>>>> at >>> org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:65) >>>>>>>>> at >>> nu.buki.neo4j.SocialNetworkService.<init>(SocialNetworkService.java:46) >>>>>>>>> at >>> nu.buki.neo4j.SocialNetworkService.main(SocialNetworkService.java:325) >>>>>>>>> Caused by: java.lang.reflect.InvocationTargetException >>>>>>>>> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native >>> Method) >>>>>>>>> at >>> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAcces sorImpl.java:39) >>>>>>>>> at >>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstruc torAccessorImpl.java:27) >>>>>>>>> at >>> java.lang.reflect.Constructor.newInstance(Constructor.java:513) >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.XaDataSourceManager.create(XaDataSourceMan ager.java:74) >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.TxModule.registerDataSource(TxModule.java: 176) >>>>>>>>> ... 10 more >>>>>>>>> Caused by: java.lang.NullPointerException >>>>>>>>> at >>> org.neo4j.index.impl.lucene.LuceneDataSource.findDocument(LuceneDataSource.j ava:602) >>>>>>>>> at >>> org.neo4j.index.impl.lucene.CommitContext.getDocument(CommitContext.java:71) >>>>>>>>> at >>> org.neo4j.index.impl.lucene.LuceneCommand$AddRelationshipCommand.perform(Luc eneCommand.java:212) >>>>>>>>> at >>> org.neo4j.index.impl.lucene.LuceneTransaction.doCommit(LuceneTransaction.jav a:231) >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaTransaction.commit(XaTransac tion.java:319) >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.injectTwoPha seCommit(XaResourceManager.java:380) >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyTwoPhaseComm itEntry(XaLogicalLog.java:577) >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyEntry(XaLogi calLog.java:469) >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.doInternalRecover y(XaLogicalLog.java:804) >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog .java:274) >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog .java:197) >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.xaframework.XaContainer.openLogicalLog(XaC ontainer.java:98) >>>>>>>>> at >>> org.neo4j.index.impl.lucene.LuceneDataSource.<init>(LuceneDataSource.java:20 7) >>>>>>>>> ... 16 more >>>>>>>>> 12.01.2011 21:05:01 org.neo4j.kernel.impl.transaction.TxManager init >>>>>>>>> INFO: Unresolved transactions found, recovery started ... >>>>>>>>> Exception in thread "main" >>> org.neo4j.graphdb.TransactionFailureException: No mapping found for >>> branchId[0x162374] >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.XaDataSourceManager.getXaResource(XaDataSo urceManager.java:186) >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.TxManager.getXaResource(TxManager.java:935 ) >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.TxManager.buildRecoveryInfo(TxManager.java :416) >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.TxManager.recover(TxManager.java:257) >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.TxManager.init(TxManager.java:181) >>>>>>>>> at >>> org.neo4j.kernel.impl.transaction.TxModule.start(TxModule.java:85) >>>>>>>>> at >>> org.neo4j.kernel.GraphDbInstance.start(GraphDbInstance.java:157) >>>>>>>>> at >>> org.neo4j.kernel.EmbeddedGraphDbImpl.<init>(EmbeddedGraphDbImpl.java:168) >>>>>>>>> at >>> org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:81) >>>>>>>>> at >>> org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:65) >>>>>>>>> at >>> nu.buki.diss.cep.data.neo4j.SocialNetworkService.<init>(SocialNetworkService .java:46) >>>>>>>>> at >>> nu.buki.diss.cep.data.neo4j.SocialNetworkService.main(SocialNetworkService.j ava:325) >>>>>>>>> >>>>>>>>> any ideas? >>>>>>>>> >>>>>>>>> Thanks, >>>>>>>>> >>>>>>>>> Andi >>>>>>>>> >>>> _______________________________________________ >>>> Neo4j mailing list >>>> User@lists.neo4j.org >>>> https://lists.neo4j.org/mailman/listinfo/user >>> >>> _______________________________________________ >>> Neo4j mailing list >>> User@lists.neo4j.org >>> https://lists.neo4j.org/mailman/listinfo/user >>> >> >> >> >> -- >> Mattias Persson, [matt...@neotechnology.com] >> Hacker, Neo Technology >> www.neotechnology.com >> _______________________________________________ >> Neo4j mailing list >> User@lists.neo4j.org >> https://lists.neo4j.org/mailman/listinfo/user > > _______________________________________________ > Neo4j mailing list > User@lists.neo4j.org > https://lists.neo4j.org/mailman/listinfo/user _______________________________________________ Neo4j mailing list User@lists.neo4j.org https://lists.neo4j.org/mailman/listinfo/user _______________________________________________ Neo4j mailing list User@lists.neo4j.org https://lists.neo4j.org/mailman/listinfo/user
