Hi again and sorry for late response, This has been some nut to crack, but finally I think the bug is resolved. It's committed and will be available in the next milestone, but is already available (at least within the next hour or so) in SNAPSHOT builds from the neo4j maven repository.
I'd like to thank you for being persistent in giving back information and being very helpful! If the issue is still there please report back. Best, Mattias 2011/1/14 Andreas Bauer <b...@gmx.net> > Hi, > > on the classpath are the libs that come with neoclipse, so geronimo and > all the neo4j-libs including neo4j-lucene-index-0.2-1.2.jar. > > When I start the database in neoclipse the following messages are written: > > Jan 14 18:17:02 CET 2011: XaResourceManager[./nioneo_logical.log] sorting 0 > xids > Fri Jan 14 18:17:02 CET 2011: XaResourceManager[./nioneo_logical.log] > checkRecoveryComplete 0 xids > Fri Jan 14 18:17:02 CET 2011: ./neostore.relationshiptypestore.db.names > rebuild id generator, highId=5 defragged count=0 > Fri Jan 14 18:17:02 CET 2011: ./neostore.propertystore.db.index.keys > rebuild id generator, highId=3 defragged count=0 > Fri Jan 14 18:17:02 CET 2011: ./neostore.propertystore.db.index rebuild id > generator, highId=2 defragged count=0 > Fri Jan 14 18:17:03 CET 2011: ./neostore.propertystore.db.strings rebuild > id generator, highId=1788 defragged count=0 > Fri Jan 14 18:17:03 CET 2011: ./neostore.propertystore.db.arrays rebuild id > generator, highId=1 defragged count=0 > Fri Jan 14 18:17:03 CET 2011: ./neostore.propertystore.db rebuild id > generator, highId=2924 defragged count=0 > Fri Jan 14 18:17:03 CET 2011: ./neostore.relationshipstore.db rebuild id > generator, highId=1137 defragged count=0 > Fri Jan 14 18:17:03 CET 2011: ./neostore.nodestore.db rebuild id generator, > highId=2019 defragged count=0 > Fri Jan 14 18:17:03 CET 2011: ./neostore rebuild id generator, highId=4 > defragged count=0 > Fri Jan 14 18:17:03 CET 2011: XaResourceManager[./nioneo_logical.log] > recovery completed. > Fri Jan 14 18:17:03 CET 2011: Recovery on log [./nioneo_logical.log.1] > completed. > Fri Jan 14 18:17:03 CET 2011: Non clean shutdown detected on log > [./lucene/lucene.log.1]. Recovery started ... > Fri Jan 14 18:17:03 CET 2011: [./lucene/lucene.log.1] logVersion=0 with > committed tx=1 > Fri Jan 14 18:17:03 CET 2011: [./lucene/lucene.log.1] entries found=0 > lastEntryPos=16 > Fri Jan 14 18:17:03 CET 2011: XaResourceManager[./lucene/lucene.log] > sorting 0 xids > Fri Jan 14 18:17:03 CET 2011: XaResourceManager[./lucene/lucene.log] > checkRecoveryComplete 0 xids > Fri Jan 14 18:17:03 CET 2011: XaResourceManager[./lucene/lucene.log] > recovery completed. > Fri Jan 14 18:17:03 CET 2011: Recovery on log [./lucene/lucene.log.1] > completed. > Fri Jan 14 18:17:03 CET 2011: Non clean shutdown detected on log > [./lucene-fulltext/lucene.log.1]. Recovery started ... > Fri Jan 14 18:17:03 CET 2011: [./lucene-fulltext/lucene.log.1] logVersion=0 > with committed tx=1 > Fri Jan 14 18:17:03 CET 2011: [./lucene-fulltext/lucene.log.1] entries > found=0 lastEntryPos=16 > Fri Jan 14 18:17:04 CET 2011: > XaResourceManager[./lucene-fulltext/lucene.log] sorting 0 xids > Fri Jan 14 18:17:04 CET 2011: > XaResourceManager[./lucene-fulltext/lucene.log] checkRecoveryComplete 0 xids > Fri Jan 14 18:17:04 CET 2011: > XaResourceManager[./lucene-fulltext/lucene.log] recovery completed. > Fri Jan 14 18:17:04 CET 2011: Recovery on log > [./lucene-fulltext/lucene.log.1] completed. > Fri Jan 14 18:17:04 CET 2011: Non clean shutdown detected on log > [./index/lucene.log.1]. Recovery started ... > Fri Jan 14 18:17:04 CET 2011: [./index/lucene.log.1] logVersion=0 with > committed tx=1 > Fri Jan 14 18:17:04 CET 2011: Injected one phase commit, txId=2 > Fri Jan 14 18:17:04 CET 2011: Injected one phase commit, txId=3 > Fri Jan 14 18:17:04 CET 2011: Injected one phase commit, txId=4 > Fri Jan 14 18:17:04 CET 2011: Injected two phase commit, txId=5 > Fri Jan 14 18:17:04 CET 2011: Injected two phase commit, txId=6 > Fri Jan 14 18:17:04 CET 2011: Failed to init extension > org.neo4j.graphdb.index.IndexProvider[lucene] Could not create data source > lucene-index[lucene-index] > org.neo4j.graphdb.TransactionFailureExtion: Could not create data source > lucene-index[lucene-index] > at > org.neo4j.kernel.impl.transaction.TxModule.registerDataSource(TxModule.java:182) > at > org.neo4j.index.impl.lucene.LuceneIndexProvider.load(LuceneIndexProvider.java:110) > at > org.neo4j.index.impl.lucene.LuceneIndexProvider.init(LuceneIndexProvider.java:94) > at > org.neo4j.kernel.KernelExtension$KernelData.initAll(KernelExtension.java:153) > at > org.neo4j.kernel.EmbeddedGraphDbImpl$2.init(EmbeddedGraphDbImpl.java:160) > at org.neo4j.kernel.GraphDbInstance.start(GraphDbInstance.java:155) > at > org.neo4j.kernel.EmbeddedGraphDbImpl.<init>(EmbeddedGraphDbImpl.java:168) > at > org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:81) > at > org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:65) > at > org.neo4j.neoclipse.graphdb.GraphDbServiceManager$Tasks$1.run(GraphDbServiceManager.java:79) > at > java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) > at > java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) > at java.util.concurrent.FutureTask.run(FutureTask.java:138) > at > java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) > at java.lang.Thread.run(Thread.java:680) > Caused by: java.lang.reflect.InvocationTargetExtion > at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native > Method) > at > sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) > at > sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) > at java.lang.reflect.Constructor.newInstance(Constructor.java:513) > at > org.neo4j.kernel.impl.transaction.XaDataSourceManager.create(XaDataSourceManager.java:74) > at > org.neo4j.kernel.impl.transaction.TxModule.registerDataSource(TxModule.java:176) > ... 15 more > Caused by: java.lang.NullPointerExtion > at > org.neo4j.index.impl.lucene.LuceneDataSource.findDocument(LuceneDataSource.java:602) > at > org.neo4j.index.impl.lucene.CommitContext.getDocument(CommitContext.java:71) > at > org.neo4j.index.impl.lucene.LuceneCommand$AddRelationshipCommand.perform(LuceneCommand.java:212) > at > org.neo4j.index.impl.lucene.LuceneTransaction.doCommit(LuceneTransaction.java:231) > at > org.neo4j.kernel.impl.transaction.xaframework.XaTransaction.commit(XaTransaction.java:319) > at > org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.injectTwoPhaseCommit(XaResourceManager.java:380) > at > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyTwoPhaseCommitEntry(XaLogicalLog.java:577) > at > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyEntry(XaLogicalLog.java:469) > at > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.doInternalRecovery(XaLogicalLog.java:804) > at > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog.java:274) > at > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog.java:197) > at > org.neo4j.kernel.impl.transaction.xaframework.XaContainer.openLogicalLog(XaContainer.java:98) > at > org.neo4j.index.impl.lucene.LuceneDataSource.<init>(LuceneDataSource.java:207) > ... 21 more > Fri Jan 14 18:17:04 CET 2011: Extension > org.neo4j.kernel.KernelExtension[shell] initialized ok > Fri Jan 14 18:17:04 CET 2011: Extension > org.neo4j.kernel.KernelExtension[kernel udc] initialized ok > Fri Jan 14 18:17:04 CET 2011: Extension > org.neo4j.kernel.KernelExtension[kernel jmx] initialized ok > Fri Jan 14 18:17:04 CET 2011: TM opening log: ./tm_tx_log.2 > Fri Jan 14 18:17:04 CET 2011: TM non resolved transactions found in > ./tm_tx_log.2 > > > > Am 14.01.2011 um 09:59 schrieb Johan Svensson: > > > Hi, > > > > Could you provide a list of what jar files are on the classpath. > > Information in the <db-dir>/messages.log printed during startup would > > also be interesting to see. > > > > -Johan > > > > On Thu, Jan 13, 2011 at 9:23 PM, Andreas Bauer <b...@gmx.net> wrote: > >> Hi, > >> > >> now I got neoclipse running from eclipse, finally :) (BTW: adding -d32 > to the VM arguments in the run configuration and copying the jnilib from > org.eclipse.swt.cocoa.macosx does the trick) > >> > >> But when I start my database I get this error: > >> > >> org.neo4j.graphdb.TransactionFailureException: No mapping found for > branchId [0x162374]: No mapping found for branchId [0x162374] > >> > >> Hmm, so how do I manage to clean up the database? shutdown() won't do > nor the source built neoclipse... any hints? > >> > >> Regards, > >> > >> Andi > >> > >> > >> Am 13.01.2011 um 20:36 schrieb Andreas Bauer: > >> > >>> Hi, > >>> > >>> the stack trace below wasn't generated by neoclipse, but by neo4j, when > I tried to run the shutdown() method. > >>> > >>> Regarding the hint build neo4j from source. Up to now I'm still > struggling with getting neoclipse run from source code on my Mac ( I'm just > dealing with the 32bit 64bit issue. > http://www.eclipse.org/swt/faq.php#cocoa64launch, which makes me quite > upset, as it additionally wastes lots of time.) So I can't say, if that > helped... > >>> > >>> Cheers, > >>> > >>> Andi > >>> > >>> > >>> Am 12.01.2011 um 23:26 schrieb Andreas Bauer: > >>> > >>>> Hi, > >>>> > >>>> I use the latest stable version for mac available on the neo4j > homepage (V1.2). And no, I didn't delete anything. > >>>> > >>>> Regards, > >>>> > >>>> Andi > >>>> > >>>> > >>>> Am 12.01.2011 um 22:52 schrieb Michael Hunger: > >>>> > >>>>> Hi Andi, > >>>>> > >>>>> what version of neo4j are you running against? The latest 1.2 or sth > else? > >>>>> > >>>>> And did you delete any of the files of the database? > >>>>> > >>>>> Thanks a lot > >>>>> > >>>>> Michael > >>>>> > >>>>> Am 12.01.2011 um 21:10 schrieb Andreas Bauer: > >>>>> > >>>>>> Hi, > >>>>>> > >>>>>> ok, I did that and now I get this stack trace > >>>>>> > >>>>>> 12.01.2011 21:04:57 > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog > doInternalRecovery > >>>>>> INFO: Non clean shutdown detected on log [cep/nioneo_logical.log.1]. > Recovery started ... > >>>>>> 12.01.2011 21:05:01 > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog > doInternalRecovery > >>>>>> INFO: Non clean shutdown detected on log [cep/lucene/lucene.log.1]. > Recovery started ... > >>>>>> 12.01.2011 21:05:01 > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog > doInternalRecovery > >>>>>> INFO: Non clean shutdown detected on log > [cep/lucene-fulltext/lucene.log.1]. Recovery started ... > >>>>>> 12.01.2011 21:05:01 > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog > doInternalRecovery > >>>>>> INFO: Non clean shutdown detected on log > [/Users/buki/Documents/workspace/Pimstr/cep/index/lucene.log.1]. Recovery > started ... > >>>>>> org.neo4j.graphdb.TransactionFailureException: Could not create data > source lucene-index[lucene-index] > >>>>>> at > org.neo4j.kernel.impl.transaction.TxModule.registerDataSource(TxModule.java:182) > >>>>>> at > org.neo4j.index.impl.lucene.LuceneIndexProvider.load(LuceneIndexProvider.java:110) > >>>>>> at > org.neo4j.index.impl.lucene.LuceneIndexProvider.init(LuceneIndexProvider.java:94) > >>>>>> at > org.neo4j.kernel.KernelExtension$KernelData.initAll(KernelExtension.java:153) > >>>>>> at > org.neo4j.kernel.EmbeddedGraphDbImpl$2.init(EmbeddedGraphDbImpl.java:160) > >>>>>> at > org.neo4j.kernel.GraphDbInstance.start(GraphDbInstance.java:155) > >>>>>> at > org.neo4j.kernel.EmbeddedGraphDbImpl.<init>(EmbeddedGraphDbImpl.java:168) > >>>>>> at > org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:81) > >>>>>> at > org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:65) > >>>>>> at > nu.buki.neo4j.SocialNetworkService.<init>(SocialNetworkService.java:46) > >>>>>> at > nu.buki.neo4j.SocialNetworkService.main(SocialNetworkService.java:325) > >>>>>> Caused by: java.lang.reflect.InvocationTargetException > >>>>>> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native > Method) > >>>>>> at > sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) > >>>>>> at > sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) > >>>>>> at > java.lang.reflect.Constructor.newInstance(Constructor.java:513) > >>>>>> at > org.neo4j.kernel.impl.transaction.XaDataSourceManager.create(XaDataSourceManager.java:74) > >>>>>> at > org.neo4j.kernel.impl.transaction.TxModule.registerDataSource(TxModule.java:176) > >>>>>> ... 10 more > >>>>>> Caused by: java.lang.NullPointerException > >>>>>> at > org.neo4j.index.impl.lucene.LuceneDataSource.findDocument(LuceneDataSource.java:602) > >>>>>> at > org.neo4j.index.impl.lucene.CommitContext.getDocument(CommitContext.java:71) > >>>>>> at > org.neo4j.index.impl.lucene.LuceneCommand$AddRelationshipCommand.perform(LuceneCommand.java:212) > >>>>>> at > org.neo4j.index.impl.lucene.LuceneTransaction.doCommit(LuceneTransaction.java:231) > >>>>>> at > org.neo4j.kernel.impl.transaction.xaframework.XaTransaction.commit(XaTransaction.java:319) > >>>>>> at > org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.injectTwoPhaseCommit(XaResourceManager.java:380) > >>>>>> at > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyTwoPhaseCommitEntry(XaLogicalLog.java:577) > >>>>>> at > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyEntry(XaLogicalLog.java:469) > >>>>>> at > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.doInternalRecovery(XaLogicalLog.java:804) > >>>>>> at > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog.java:274) > >>>>>> at > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog.java:197) > >>>>>> at > org.neo4j.kernel.impl.transaction.xaframework.XaContainer.openLogicalLog(XaContainer.java:98) > >>>>>> at > org.neo4j.index.impl.lucene.LuceneDataSource.<init>(LuceneDataSource.java:207) > >>>>>> ... 16 more > >>>>>> 12.01.2011 21:05:01 org.neo4j.kernel.impl.transaction.TxManager init > >>>>>> INFO: Unresolved transactions found, recovery started ... > >>>>>> Exception in thread "main" > org.neo4j.graphdb.TransactionFailureException: No mapping found for > branchId[0x162374] > >>>>>> at > org.neo4j.kernel.impl.transaction.XaDataSourceManager.getXaResource(XaDataSourceManager.java:186) > >>>>>> at > org.neo4j.kernel.impl.transaction.TxManager.getXaResource(TxManager.java:935) > >>>>>> at > org.neo4j.kernel.impl.transaction.TxManager.buildRecoveryInfo(TxManager.java:416) > >>>>>> at > org.neo4j.kernel.impl.transaction.TxManager.recover(TxManager.java:257) > >>>>>> at > org.neo4j.kernel.impl.transaction.TxManager.init(TxManager.java:181) > >>>>>> at > org.neo4j.kernel.impl.transaction.TxModule.start(TxModule.java:85) > >>>>>> at > org.neo4j.kernel.GraphDbInstance.start(GraphDbInstance.java:157) > >>>>>> at > org.neo4j.kernel.EmbeddedGraphDbImpl.<init>(EmbeddedGraphDbImpl.java:168) > >>>>>> at > org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:81) > >>>>>> at > org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:65) > >>>>>> at > nu.buki.diss.cep.data.neo4j.SocialNetworkService.<init>(SocialNetworkService.java:46) > >>>>>> at > nu.buki.diss.cep.data.neo4j.SocialNetworkService.main(SocialNetworkService.java:325) > >>>>>> > >>>>>> any ideas? > >>>>>> > >>>>>> Thanks, > >>>>>> > >>>>>> Andi > >>>>>> > > _______________________________________________ > > Neo4j mailing list > > User@lists.neo4j.org > > https://lists.neo4j.org/mailman/listinfo/user > > _______________________________________________ > Neo4j mailing list > User@lists.neo4j.org > https://lists.neo4j.org/mailman/listinfo/user > -- Mattias Persson, [matt...@neotechnology.com] Hacker, Neo Technology www.neotechnology.com _______________________________________________ Neo4j mailing list User@lists.neo4j.org https://lists.neo4j.org/mailman/listinfo/user
