Am 19.03.2014 um 14:02 schrieb Abhinav Mittal: > -------------------------------------------------------------------------------------------------------------------------------- > abhinav@abhnav:~$ qconf -sel > abhnav > abhinav@abhnav:~$ qconf -sql > New > abhinav@abhnav:~$ qconf -sconf > #global: > execd_spool_dir /var/spool/gridengine/execd > mailer /usr/bin/mail > xterm /usr/bin/xterm > load_sensor none > prolog none > epilog none > shell_start_mode posix_compliant > login_shells bash,sh,ksh,csh,tcsh > min_uid 0 > min_gid 0 > user_lists none > xuser_lists none > projects none > xprojects none > enforce_project false > enforce_user auto > load_report_time 00:00:40 > max_unheard 00:05:00 > reschedule_unknown 00:00:00 > loglevel log_warning
This I suggest to change to: loglevel log_info > administrator_mail root > set_token_cmd none > pag_cmd none > token_extend_time none > shepherd_cmd none > qmaster_params none > execd_params none > reporting_params accounting=true reporting=false \ > flush_time=00:00:15 joblog=false sharelog=00:00:00 > finished_jobs 100 > gid_range 65400-65500 > max_aj_instances 2000 > max_aj_tasks 75000 > max_u_jobs 0 > max_jobs 0 > auto_user_oticket 0 > auto_user_fshare 0 > auto_user_default_project none > auto_user_delete_time 86400 > delegated_file_staging false > reprioritize 0 > rlogin_daemon /usr/sbin/sshd -i > rlogin_command /usr/bin/ssh > qlogin_daemon /usr/sbin/sshd -i > qlogin_command /usr/share/gridengine/qlogin-wrapper > rsh_daemon /usr/sbin/sshd -i > rsh_command /usr/bin/ssh Did you set this up? The default is to use the builtin tools for the commands above. > jsv_url none > jsv_allowed_mod ac,h,i,e,o,j,M,N,p,w Fine. > abhinav@abhnav:~$ qstat -f > queuename qtype resv/used/tot. load_avg arch > states > --------------------------------------------------------------------------------- > New@abhnav BIP 0/0/1 0.68 lx26-amd64 > > ############################################################################ > - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS > ############################################################################ > 3 0.75000 emt0.0.0.t abhinav qw 03/16/2014 00:54:30 1 > 5 0.75000 emt0.0.0.t abhinav qw 03/16/2014 07:44:02 1 > 6 0.75000 emt0.0.0.t abhinav qw 03/16/2014 07:46:05 1 > 7 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:16:49 1 > 9 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:23:41 1 > 10 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:25:11 1 > 11 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:27:40 1 > 12 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:47:21 1 > 13 0.75000 emt0.0.0.t abhinav qw 03/18/2014 23:14:14 1 > 14 0.75000 emt0.0.0.t abhinav qw 03/18/2014 23:14:48 1 > 15 0.75000 emt0.0.0.t abhinav qw 03/19/2014 16:06:01 1 > 16 0.25000 script.sh abhinav qw 03/19/2014 17:03:34 1 > 17 0.25000 script.sh abhinav qw 03/19/2014 17:04:14 1 > 18 0.25000 script.sh abhinav qw 03/19/2014 17:04:54 1 > 19 0.25000 script.sh abhinav qw 03/19/2014 17:07:08 1 So, what does the queue look like: $ qconf -sq New -- Reuti > abhinav@abhnav:~$ hostname > abhnav > > On Wed, Mar 19, 2014 at 5:24 PM, Reuti <[email protected]> wrote: >> >> Am 19.03.2014 um 12:37 schrieb Abhinav Mittal: >> >>> Not working >>> >>> abhinav@abhnav:~$ qconf -ss >>> abhnav >>> localhost >>> abhinav@abhnav:~$ hostname >>> abhnav >>> abhinav@abhnav:~$ qsub script.sh >>> Unable to run job: warning: abhinav your job is not allowed to run in any >>> queue >>> Your job 18 ("script.sh") has been submitted. >>> Exiting. >>> >>> Same for qsub -b y as well >>> >>> On Wed, Mar 19, 2014 at 4:30 PM, Reuti <[email protected]> wrote: >>>> Hi, >>>> >>>> Am 19.03.2014 um 11:45 schrieb Abhinav Mittal: >>>> >>>>> I am trying to run a software called >>>>> "Segway"(http://noble.gs.washington.edu/proj/segway/doc/1.1.0/segway.html) >>>> >>>> Before looking into any application specific problems: is a simple script >>>> echo'ing "Hello World" working? Can you submit a binary with `qsub -b y >>>> hostname` too? >>>> >>>> -- Reuti >>>> >>>> >>>>> and getting an error "your job is not allowed to run in any que". >>>>> submit host : localhost , abhnav >>>>> hostname : abhnav >>>>> Still I am getting this error >>>>> Please help. >>>>> >>>>> ----------------------------------------------------------------------------------------------------------------- >>>>> >>>>> abhinav@abhnav:~$ segway --num-labels=4 train test.genomedata traindir >>>>> traindir/observations/chr21.0000.float32 (9411193, 9595548) >>>>> ____ PROGRAM ENDED SUCCESSFULLY WITH STATUS 0 AT Wednesday March 19 >>>>> 2014, 16:06:01 IST ____ >>>>> Traceback (most recent call last): >>>>> File "/home/abhinav/arch/Linux-x86_64/bin/segway", line 9, in <module> >>>>> load_entry_point('segway==1.1.0', 'console_scripts', 'segway')() >>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>> line 3592, in main >>>>> return runner() >>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>> line 3429, in __call__ >>>>> self.run(*args, **kwargs) >>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>> line 3407, in run >>>>> self.run_train() >>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>> line 3038, in run_train >>>>> instance_params = run_train_func(num_segs_range) >>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>> line 3056, in run_train_singlethread >>>>> res = [self.run_train_instance()] >>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>> line 2937, in run_train_instance >>>>> self.run_train_round(instance_index, round_index, **kwargs) >>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>> line 2899, in run_train_round >>>>> round_index, **kwargs) >>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>> line 2770, in queue_train_parallel >>>>> res.queue(restartable_job) >>>>> File >>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>> line 174, in queue >>>>> self._queue_unconditional(restartable_job) >>>>> File >>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>> line 164, in _queue_unconditional >>>>> jobid = restartable_job.run() >>>>> File >>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>> line 116, in run >>>>> res = self.session.runJob(job_template) >>>>> File >>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/session.py", >>>>> line 314, in runJob >>>>> c(drmaa_run_job, jid, sizeof(jid), jobTemplate) >>>>> File >>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/helpers.py", >>>>> line 299, in c >>>>> return f(*(args + (error_buffer, sizeof(error_buffer)))) >>>>> File >>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/errors.py", >>>>> line 151, in error_check >>>>> raise _ERRORS[code - 1](error_string) >>>>> drmaa.errors.DeniedByDrmException: code 17: warning: abhinav your job >>>>> is not allowed to run in any queue >>>>> Your job 15 ("emt0.0.0.traindir.43308e4eaf5211e3a4741803736f5e43") has >>>>> been submitted >>>>> abhinav@abhnav:~$ hostname >>>>> abhnav >>>>> abhinav@abhnav:~$ qconf -ss >>>>> abhnav >>>>> localhost >>>>> _______________________________________________ >>>>> users mailing list >>>>> [email protected] >>>>> https://gridengine.org/mailman/listinfo/users >>>> >> >> >> _______________________________________________ >> users mailing list >> [email protected] >> https://gridengine.org/mailman/listinfo/users _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
