Hi Mun,
What's the shell set to for the queue? If I remember right csh is the
default (and it'll use the default if you don't specify -S). For example:
For our setup "qconf -sconf | grep shell" shows:
shell_start_mode posix_compliant
login_shells sh,bash,ksh,csh,tcsh
and "qconf -sq somequeue | grep shell" shows:
shell /bin/bash
shell_start_mode posix_compliant
We recently switched the shell from /bin/csh to /bin/bash on each queue
since so few were using csh anyway. This still tries to source
.bash_profile, since it'll be a login shell either way. (Is that the
part that's problematic, though, as opposed to csh vs. bash?)
Jesse
On 05/10/2016 01:30 PM, Mun Johl wrote:
Hi,
I'm running OGS/GE 2011.11p1 on CentOS 6.5 .
I have noticed that for some reason ~/.cshrc is read automatically for
every qsub command I issue. My default environment is actually Bash; I
only put a .cshrc in my home dir to test something for a peer and then I
noticed qsub would read the .cshrc file automatically (which negatively
affected my jobs).
I do not have a .sge_request file in my home dir nor in the dir from
where I launch qsub. And my qsub options do not include -S .
I've tried various SGE DEBUG LEVELs, but none that I've tried have left
breadcrumbs as to why ~/.cshrc was being read.
This is driving me crazy, so any insight would be helpful. Yes, I
_could_ just remove the .cshrc file, but others here actually use
csh/tcsh and could be affected by this as well. Therefore, I'd like to
root cause the issue if possible.
Thanks,
--
Mun
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