Hi Andy:
I did figure it out, however it takes to much time (CONSTRUCT) to finish as
my query is complex. Is that something normal ? in fact, it is still
running
AdeeB
On Sat, Nov 2, 2013 at 9:56 AM, Adeeb Noor <adeeb.n...@colorado.edu> wrote:
> Hi Andy:
>
> Thanks for the quick response. I tried CONSTRUCT and it did work out. But
> how can I reformat such a query to CONSTRUCT one:
>
> SELECT DISTINCT *
>
> {
>
> ?ddi ddids:has_association ?c .
>
> ?ddi ddids:has_association ?c2 .
>
> ?c ddids:chemical_or_drug_affects_gene_product ?omim .
>
> ?omim ddids:gene_product_encoded_by_gene ?g .
>
> ?g ddids:gene_plays_role_in_process ?w .
>
> ?g ddids:gene_plays_role_in_process ?bp .
>
> ?bp ddids:process_involves_gene ?g2 .
>
> ?g2 ddids:gene_plays_role_in_process ?bp2 .
>
>
> where I need each variable ( for example ?w, ?bp , etc) to be a new
> resources.
>
> Thanks
>
>
> On Sat, Nov 2, 2013 at 6:41 AM, Andy Seaborne <a...@apache.org> wrote:
>
>> You need to use a CONSTRUCT query, not a SELECT one.
>>
>> outputAsRDF encodes the result set (i.e. the table) as RDF - it is not
>> the datamodel of the original data.
>>
>> CONSTRUCT allows you to create one RDF graph from data from another.
>>
>> See also SPARQL Update for doign that from one graph to another in the
>> same database.
>>
>> Andy
>>
>>
>> On 02/11/13 05:35, Adeeb Noor wrote:
>>
>>> Hi guys:
>>>
>>> I would like to save my SPARQL result coming from ResultSet into new rdf.
>>> (new rdf resources) cause I want to do more work on this subgraph and it
>>> has to be in the original rdf format.
>>>
>>> I tried outputAsRDF function and it worked however the result I got the
>>> following:
>>>
>>> <rdf:Description rdf:nodeID="A5">
>>> <rs:value rdf:resource="
>>> https://csel.cs.colorado.edu/~noor/Drug_Disease_ontology/
>>> DDID.owl#genotypePhenotype
>>> "/>
>>> <rs:variable>omimt</rs:variable>
>>> </rdf:Description>
>>> <rdf:Description rdf:nodeID="A6">
>>> <rs:value rdf:resource="
>>> https://csel.cs.colorado.edu/~noor/Drug_Disease_ontology/
>>> DDID.rdf#C0007589
>>> "/>
>>> <rs:variable>w</rs:variable>
>>> </rdf:Description>
>>> <rdf:Description rdf:nodeID="A7">
>>> <rs:binding rdf:nodeID="A8"/>
>>> <rs:binding rdf:nodeID="A9"/>
>>> <rs:binding rdf:nodeID="A10"/>
>>> <rs:binding rdf:nodeID="A11"/>
>>> <rs:binding rdf:nodeID="A12"/>
>>> <rs:binding rdf:nodeID="A13"/>
>>> <rs:binding rdf:nodeID="A14"/>
>>> <rs:binding rdf:nodeID="A15"/>
>>> <rs:binding rdf:nodeID="A16"/>
>>> <rs:binding rdf:nodeID="A17"/>
>>> <rs:binding rdf:nodeID="A18"/>
>>> <rs:binding rdf:nodeID="A19"/>
>>> <rs:binding rdf:nodeID="A20"/>
>>> <rs:binding rdf:nodeID="A21"/>
>>> <rs:binding rdf:nodeID="A22"/>
>>> <rs:binding rdf:nodeID="A23"/>
>>> <rs:binding rdf:nodeID="A24"/>
>>> <rs:binding rdf:nodeID="A25"/>
>>> <rs:binding rdf:nodeID="A26"/>
>>> <rs:binding rdf:nodeID="A27"/>
>>> </rdf:Description>
>>>
>>> how I can remove this nodes things and make it something like:
>>>
>>> <rdf:Description rdf:about="
>>> https://csel.cs.colorado.edu/~noor/Drug_Disease_ontology/
>>> DDID.rdf#C3229174">
>>> <j.0:label>Cytra-K Oral Product</j.0:label>
>>> <rdf:type rdf:resource="
>>> https://csel.cs.colorado.edu/~noor/Drug_Disease_ontology/
>>> DDID.owl#chemical
>>> "/>
>>> </rdf:Description>
>>>
>>> please help me out
>>>
>>>
>>
>
>
> --
> Adeeb Noor
> Ph.D. Candidate
> Dept of Computer Science
> University of Colorado at Boulder
> Cell: 571-484-3303
> Email: adeeb.n...@colorado.edu
>
--
Adeeb Noor
Ph.D. Candidate
Dept of Computer Science
University of Colorado at Boulder
Cell: 571-484-3303
Email: adeeb.n...@colorado.edu
