Similar problem for me on OS X. I don't understand something: the dependencies for scipy include meson_python, but that package is not installed before scipy attempts to build, and fails. Running "make meson_python" and then "make scipy" succeeds, as does "make".
On Saturday, September 16, 2023 at 2:59:58 PM UTC-7 Kwankyu Lee wrote: > Succeeded after sage -pip install meson-python. > > On Sunday, September 17, 2023 at 6:52:59 AM UTC+9 Kwankyu Lee wrote: > >> Incremental build failed >> >> [scipy-1.11.2] >> [......................................................................] >> [scipy-1.11.2] scipy-1.11.2 >> [scipy-1.11.2] ==================================================== >> [sagelib-10.2.beta3] Removing file or directory >> /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/sagemath-standard.egg-link >> [sagelib-10.2.beta3] Removing pth entries from >> /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/easy-install.pth: >> [sagelib-10.2.beta3] Removing entry: >> /Users/kwankyu/GitHub/sage-dev/src >> [sagelib-10.2.beta3] Successfully uninstalled >> sagemath-standard-10.2b3 >> [sagelib-10.2.beta3] Running setup.py develop for sagemath-standard >> [sagelib-10.2.beta3] Running command python setup.py develop >> [scipy-1.11.2] Setting up build directory for scipy-1.11.2 >> [scipy-1.11.2] Finished extraction >> [scipy-1.11.2] Applying patches from ../patches... >> [scipy-1.11.2] Applying ../patches/numpy-include.patch >> [scipy-1.11.2] patching file scipy/spatial/setup.py >> [scipy-1.11.2] Hunk #1 succeeded at 39 (offset -1 lines). >> [scipy-1.11.2] Applying ../patches/tests_no_internet_dependency.patch >> [scipy-1.11.2] patching file scipy/datasets/meson.build >> [scipy-1.11.2] **************************************************** >> [scipy-1.11.2] Host system: >> [scipy-1.11.2] Darwin Helios.local 22.6.0 Darwin Kernel Version 22.6.0: >> Wed Jul 5 22:21:56 PDT 2023; root:xnu-8796.141.3~6/RELEASE_X86_64 x86_64 >> [scipy-1.11.2] **************************************************** >> [scipy-1.11.2] C compiler: gcc >> [scipy-1.11.2] C compiler version: >> [scipy-1.11.2] Apple clang version 14.0.3 (clang-1403.0.22.14.1) >> [scipy-1.11.2] Target: x86_64-apple-darwin22.6.0 >> [scipy-1.11.2] Thread model: posix >> [scipy-1.11.2] InstalledDir: /Library/Developer/CommandLineTools/usr/bin >> [scipy-1.11.2] **************************************************** >> [scipy-1.11.2] Package 'scipy' is currently not installed >> [scipy-1.11.2] No legacy uninstaller found for 'scipy'; nothing to do >> [scipy-1.11.2] Installing scipy-1.11.2 >> [scipy-1.11.2] DEPRECATION: --no-binary currently disables reading from >> the cache of locally built wheels. In the future --no-binary will not >> influence the wheel cache. pip 23.1 will enforce this behaviour change. A >> possible replacement is to use the --no-cache-dir option. You can use the >> flag --use-feature=no-binary-enable-wheel-cache to test the upcoming >> behaviour. Discussion can be found at >> https://github.com/pypa/pip/issues/11453 >> [scipy-1.11.2] Processing >> /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/scipy-1.11.2/src >> [scipy-1.11.2] Preparing metadata (pyproject.toml): started >> [scipy-1.11.2] Running command Preparing metadata (pyproject.toml) >> [scipy-1.11.2] Preparing metadata (pyproject.toml): finished with >> status 'done' >> [scipy-1.11.2] ERROR: Exception: >> [scipy-1.11.2] Traceback (most recent call last): >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/cli/base_command.py", >> >> line 160, in exc_logging_wrapper >> [scipy-1.11.2] status = run_func(*args) >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/cli/req_command.py", >> >> line 247, in wrapper >> [scipy-1.11.2] return func(self, options, args) >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/commands/wheel.py", >> >> line 170, in run >> [scipy-1.11.2] requirement_set = resolver.resolve(reqs, >> check_supported_wheels=True) >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/resolver.py", >> >> line 73, in resolve >> [scipy-1.11.2] collected = >> self.factory.collect_root_requirements(root_reqs) >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", >> >> line 491, in collect_root_requirements >> [scipy-1.11.2] req = self._make_requirement_from_install_req( >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", >> >> line 453, in _make_requirement_from_install_req >> [scipy-1.11.2] cand = self._make_candidate_from_link( >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", >> >> line 206, in _make_candidate_from_link >> [scipy-1.11.2] self._link_candidate_cache[link] = LinkCandidate( >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", >> >> line 297, in __init__ >> [scipy-1.11.2] super().__init__( >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", >> >> line 162, in __init__ >> [scipy-1.11.2] self.dist = self._prepare() >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", >> >> line 231, in _prepare >> [scipy-1.11.2] dist = self._prepare_distribution() >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", >> >> line 308, in _prepare_distribution >> [scipy-1.11.2] return preparer.prepare_linked_requirement(self._ireq, >> parallel_builds=True) >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", >> >> line 491, in prepare_linked_requirement >> [scipy-1.11.2] return self._prepare_linked_requirement(req, >> parallel_builds) >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", >> >> line 577, in _prepare_linked_requirement >> [scipy-1.11.2] dist = _get_prepared_distribution( >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", >> >> line 69, in _get_prepared_distribution >> [scipy-1.11.2] abstract_dist.prepare_distribution_metadata( >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/distributions/sdist.py", >> >> line 61, in prepare_distribution_metadata >> [scipy-1.11.2] self.req.prepare_metadata() >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/req/req_install.py", >> >> line 535, in prepare_metadata >> [scipy-1.11.2] self.metadata_directory = generate_metadata( >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/build/metadata.py", >> >> line 35, in generate_metadata >> [scipy-1.11.2] distinfo_dir = >> backend.prepare_metadata_for_build_wheel(metadata_dir) >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/utils/misc.py", >> >> line 706, in prepare_metadata_for_build_wheel >> [scipy-1.11.2] return super().prepare_metadata_for_build_wheel( >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pep517/wrappers.py", >> >> line 189, in prepare_metadata_for_build_wheel >> [scipy-1.11.2] return >> self._call_hook('prepare_metadata_for_build_wheel', { >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pep517/wrappers.py", >> >> line 319, in _call_hook >> [scipy-1.11.2] raise BackendUnavailable(data.get('traceback', '')) >> [scipy-1.11.2] pip._vendor.pep517.wrappers.BackendUnavailable: Traceback >> (most recent call last): >> [scipy-1.11.2] File >> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", >> >> line 77, in _build_backend >> [scipy-1.11.2] obj = import_module(mod_path) >> [scipy-1.11.2] File >> "/usr/local/Cellar/pyt...@3.10/3.10.9/Frameworks/Python.framework/Versions/3.10/lib/python3.10/importlib/__init__.py", >> >> line 126, in import_module >> [scipy-1.11.2] return _bootstrap._gcd_import(name[level:], package, >> level) >> [scipy-1.11.2] File "<frozen importlib._bootstrap>", line 1050, in >> _gcd_import >> [scipy-1.11.2] File "<frozen importlib._bootstrap>", line 1027, in >> _find_and_load >> [scipy-1.11.2] File "<frozen importlib._bootstrap>", line 1004, in >> _find_and_load_unlocked >> [scipy-1.11.2] ModuleNotFoundError: No module named 'mesonpy' >> [scipy-1.11.2] >> [scipy-1.11.2] >> ******************************************************************************** >> [scipy-1.11.2] Error building a wheel for scipy-1.11.2 >> [scipy-1.11.2] >> ******************************************************************************** >> [scipy-1.11.2] >> [scipy-1.11.2] real 0m0.924s >> [scipy-1.11.2] user 0m0.663s >> [scipy-1.11.2] sys 0m0.184s >> [scipy-1.11.2] >> ************************************************************************ >> [scipy-1.11.2] Error installing package scipy-1.11.2 >> >> On Sunday, September 17, 2023 at 12:31:53 AM UTC+9 Volker Braun wrote: >> >>> As always, you can get the latest beta version from the "develop" git >>> branch. Alternatively, the self-contained source tarball is at >>> http://www.sagemath.org/download-latest.html >>> >>> >>> 80f6d772a15 (tag: 10.2.beta3, github/develop) Updated SageMath version >>> to 10.2.beta3 >>> f32860b2015 gh-36263: Fix setuptools version bounds in generated >>> `pyproject.toml` files >>> c95bd1440b4 gh-36260: `MPowerSeries`: Don't go through symbolics to >>> compute exp(0), log(1) >>> cac16e2fa5d gh-36256: Support more system-site packages >>> 238b1dc6eef gh-36255: numpy-1.25 compatibility >>> 486d3b99e87 gh-36250: various details in sets/disjoint_set >>> 357b34b55f7 gh-36249: E228 and E225 in groups,interfaces,modules,plot >>> adc3df9e5c0 gh-36248: some care for unused variables in matrix/ >>> 413b5d679c5 gh-36247: fix E228 and E225 in categories/ >>> 96d249a37d9 gh-36243: ⬆️ Bump actions/checkout from 3 to 4 >>> 4bb48bddfa4 gh-36241: ⬆️ Bump myrotvorets/set-commit-status-action from >>> 1.1.7 to 2.0.0 >>> 191d1f97ba6 gh-36240: Fix Python package metadata generated by >>> `bootstrap` >>> 905d3c2d486 gh-36238: `sage -t`: Distinguish .pxd from .pyx in doctest >>> basenames >>> b6b50a80e96 gh-36235: support for ecl 23.9.9 >>> 683b05bb5a2 gh-36232: Make `min_spanning_tree` robust to incomparable >>> vertex labels >>> 8d09d156fcf gh-36231: fix typo in documentation >>> 33182d9feaa gh-36225: improve the use of graphs in >>> `sage/combinat/posets/*` >>> 33d6cc5a001 gh-36224: Add cycle_type() and fix to_cycle() to >>> SignedPermutation. >>> 3e6db2405df gh-36221: get rid of xrange again >>> 029450c8712 gh-36219: configure.ac: disable webencodings,tinycss2 with >>> --disable-notebook >>> 3ea961767e8 gh-36218: src/bin/sage-env: set >>> PYDEVD_DISABLE_FILE_VALIDATION=1 >>> f95e442cb4b gh-36213: Fix sync labels issues for step 2 going live >>> e74579d32b9 gh-36212: singular: added missing #endif >>> 322ad22e8c8 gh-36210: configure.ac: disable mathjax with --disable-doc >>> 6fe3561bbbb gh-36209: build/pkgs/ipython/dependencies: drop jinja2 >>> 78efe5546db gh-36206: Remove some obsolete "six" dependencies >>> 1a1df6f6fbe gh-36186: Drop obsolete html5lib package >>> 5b2f125a842 gh-36176: build/pkgs/tox: Update, require tox >= 4.2.7, >>> update dependencies >>> 9dd8a772e53 gh-36168: `sage.groups`: Modularization fixes, `# needs`, >>> doctest cosmetics >>> 4f4fbc29184 gh-36165: Fix reduction of cusps for Gamma(N) >>> 45537351d7e gh-36122: Added hash function to elements of the fundamental >>> group of an extended affine Weyl group >>> 5b9137c7204 gh-35970: src/sage/combinat/affine_permutation.py: Fix >>> docstring markup >>> bbe57a4d34d gh-35964: Matroids: Don't forget to check rank in `equals`, >>> `is_isomorphism` >>> 23b1a0af6f0 gh-35875: Implementing moment angle complexes >>> 3a3126ffc0e gh-35767: add .basis_matrix() wrapper to quaternion orders >>> d412568dff7 gh-35485: New comparison mode to lazy series and better >>> undefined check >>> 21a624a7b45 gh-35362: Implement infinite sums and products for lazy >>> series >>> 8c040276465 gh-35038: Implement Milnor fiber and Coxeter complexes >>> 41031292ff1 (tag: 10.2.beta2) Updated SageMath version to 10.2.beta2 >>> >> -- You received this message because you are subscribed to the Google Groups "sage-release" group. 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