I really have no view providing that if you include the whole side chain
you must set the atom occupancy to 0.00 forthe invisible atoms..
Eleanor
Nicholas Noinaj wrote:
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Hi,
i would like to get opinions on whether or not one removes side-chain atoms where
there is no density. for example, if one can only observe density up to the
beta-carbon for lysine (say at > 0.5 sigma), does one leave the lysine side
chain intact, knowing it must be disordered, or does one terminate at the
beta-carbon, making the coordinates reflect what is actually observed in the
density.
It seems both approaches are published and people seem to have conflicting opinions on the topic. It would be nice to come to some concensus, possibly clear up the issue for us newbies.
Thanks in advance for all feedback!
Cheers,
NIck
________________________________________
Nicholas Noinaj
University of Kentucky College of Medicine
Department of Molecular and Cellular Biochemistry
The Center for Structural Biology
Biomedical Biological Sciences Research Building, Rm 236
741 S. Limestone
Lexington, Ky 40536
Lab: 859-323-8183
Cell: 859-893-4789
Home: 859-228-0978
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noinaj.com
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