Does one regard the metal atom in a metalloprotein as being part of the protein?

If so, a shared metal could occupy a special position in a dimer for example. 

In Acta Cryst. (2008). D64, 257-263 "Metals in proteins: correlation between 
the metal-ion type, coordination number and the amino-acid residues involved in 
the coordination" I. Dokmanic, M. Sikic and S. Tomic ( 
http://scripts.iucr.org/cgi-bin/paper?S090744490706595X ) it says there are 25 
cases of metal atoms in special positions. 

Also Acta Cryst. (2002). D58, 29-38 "The 2.6 Å resolution structure of 
Rhodobacter capsulatus bacterioferritin with metal-free dinuclear site and heme 
iron in a crystallographic `special position' "D. Cobessi, L.-S. Huang, M. Ban, 
N. G. Pon, F. Daldal and E. A. Berry ( 
http://scripts.iucr.org/cgi-bin/paper?S0907444901017267 ) though the 'special 
position' is justifiably in quotation marks in this example as disorder is 
present.

Colin

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