I guess I saw it as a short-term thing -- having default and -fast, and then if/when we deprecate the older one the -fast will just change to regular ctakes-dictionary-lookup. But that could maybe be confusing to people too. Tim
On 06/16/2014 11:24 AM, Masanz, James J. wrote: > I'd rather something else than "dictionary-lookup-fast". If we come up with > something even faster than this one, having an older one called "fast" could > be confusing. > > -----Original Message----- > From: Dligach, Dmitriy [mailto:dmitriy.dlig...@childrens.harvard.edu] > Sent: Monday, June 16, 2014 9:55 AM > To: cTAKES Developer list > Subject: Re: Preparing for an Apache cTAKES 3.2 Release? > > +1 > > Dima > > > > > On Jun 16, 2014, at 9:42, Miller, Timothy > <timothy.mil...@childrens.harvard.edu> wrote: > >> Sorry to weigh in so late on this -- just returned from vacation. If we >> want to have a one release delay before making dictionary2 default for >> testing/documentation/configuration purposes, and there isn't an obvious >> function-related name, and the main difference is speed, maybe we could >> call it dictionary-lookup-fast? Besides being accurate and more >> descriptive than "2", it might lure people into trying it and give us >> some feedback. >> >> Tim >> >> >> On 06/16/2014 10:34 AM, Chen, Pei wrote: >>> I'm making some significant updates to trunk that may cause some >>> instability for this release. >>> It should be mostly transparent, but let me know if you encounter any >>> issues with trunk. >>> >>> Also, regarding the dictionary-lookup2. If there are no strong objections, >>> we can leave default to as-is (old behavior). Folks who wish to give the >>> new one a try are welcome to do so and we can change the default behavior >>> in a future release. >>> >>> [ducks for cover now] >>> --Pei >>> >>>> -----Original Message----- >>>> From: ksa...@gmail.com [mailto:ksa...@gmail.com] On Behalf Of Karthik >>>> Sarma >>>> Sent: Wednesday, June 11, 2014 9:58 AM >>>> To: dev@ctakes.apache.org >>>> Subject: Re: Preparing for an Apache cTAKES 3.2 Release? >>>> >>>> Agreed >>>> >>>> On Wednesday, June 11, 2014, vijay garla <vnga...@gmail.com> wrote: >>>> >>>>> regardless of the name, I think it would be incredibly helpful to have >>>>> thorough documentation on the dictionary lookup, how to configure it, >>>>> and how to create new dictionaries. I would venture to say that this >>>>> is the most important component in cTAKES, and probably the one that >>>>> has generated the most questions on the newsgroup. >>>>> >>>>> >>>>> >>>>> On Wed, Jun 11, 2014 at 9:21 AM, Finan, Sean < >>>>> sean.fi...@childrens.harvard.edu> wrote: >>>>> >>>>>>> . The newer NER should have in its name the Behavior... >>>>>> I agree, but the *2 module is a complete replacement for the current >>>>>> lookup. It does not (really) have any different behavior, just a >>>>> different >>>>>> implementation and performance. We plan to swap out the old with >>>>>> the new in the next release and get rid of the *2 suffix. So, any >>>>>> name provided now is just temporary - unless people don't like the >>>>>> name "dictionary-lookup" at all. >>>>>> >>>>>> In my original sandbox it was named "RareWordLookup", a nod to its >>>>>> implementation. However, this doesn't help any users. >>>>>> >>>>>> Sean >>>>>> >>>>>> -----Original Message----- >>>>>> From: andy mcmurry [mailto:mcmurry.a...@gmail.com] >>>>>> Sent: Wednesday, June 11, 2014 3:09 AM >>>>>> To: dev@ctakes.apache.org >>>>>> Subject: Re: Preparing for an Apache cTAKES 3.2 Release? >>>>>> >>>>>> "2" doesn't mean much. The newer NER should have in its name the >>>>>> Behavior... >>>>>> >>>>>> Perhaps something like MetaMap Usage >>>>>> <http://metamap.nlm.nih.gov/Docs/MM09_Usage.shtml> "-- >>>> allow_overmatches" >>>>>> or "--allow_concept_gaps" or .....other? >>>>>> >>>>>> Since yTex already provides a pluggable *DictionaryLookup, *that >>>>>> seems like the best place to define the differing Behavior / Usage. >>>>>> >>>>>> https://cwiki.apache.org/confluence/display/CTAKES/User's+Guide >>>>>> https://code.google.com/p/ytex/wiki/DictionaryLookup_V05 >>>>>> >>>>>> >>>>>> AndyMC >>>>>> >>>>>> On Tue, Jun 10, 2014 at 9:55 AM, britt fitch <britt.fi...@gmail.com> >>>>>> wrote: >>>>>> >>>>>>> I don't have an issue with the *-2 name. I also don't have any >>>>>>> objections to renaming it. >>>>>>> >>>>>>> It might be nice to keep the old dictionary code around for a >>>>>>> release-worth of time but after that I would vote purging it. >>>>>>> If someone needs it after that it'll be accessible in the archived >>>>>>> releases. >>>>>>> >>>>>>> >>>>>>> >>>>>>> On Jun 10, 2014, at 12:48 PM, Chen, Pei >>>>>>> <pei.c...@childrens.harvard.edu> >>>>>>> wrote: >>>>>>> >>>>>>>> I think James has a fair point here. >>>>>>>> It may be worthwhile biting the bullet here and push forward. >>>>>>>> >>>>>>>> Since this essentially will be a full replacement of the >>>>>>> ctakes-dictionary-lookup module, a good option maybe to just >>>>>>> replace the entire module now and rename the existing module to * >>>> _deprecated. >>>>>>>> How do folks feel about that? In a nutshell, >>>>>>>> ctakes-dictionary-lookup-2 >>>>>>> is a faster algorithm with a simpler code base- and comparable >>>>>>> results (Sean has a full comparison in the documentation for those >>>>>>> who are >>>>>> curious). >>>>>>>> --Pei >>>>>>>> >>>>>>>>> -----Original Message----- >>>>>>>>> From: britt fitch [mailto:britt.fi...@gmail.com] >>>>>>>>> Sent: Monday, June 09, 2014 5:42 PM >>>>>>>>> To: dev@ctakes.apache.org >>>>>>>>> Subject: Re: Preparing for an Apache cTAKES 3.2 Release? >>>>>>>>> >>>>>>>>> There is some documentation in the dictionary2 module under >>>>>>>>> /doc/DictionaryLookupHelp.{txt | docx} that gives some some >>>>>>>>> details of >>>>>>> the >>>>>>>>> different lookup implementation options within that module that >>>>>>>>> I found helpful. >>>>>>>>> >>>>>>>>> >>>>>>>>> On Jun 9, 2014, at 5:17 PM, Masanz, James J. >>>>>>>>> < >>>> >>>> -- >>>> >>>> >>>> >>>> >>>> -- >>>> Karthik Sarma >>>> UCLA Medical Scientist Training Program Class of 20?? >>>> Member, UCLA Medical Imaging & Informatics Lab Member, CA Delegation >>>> to the House of Delegates of the American Medical Association >>>> ksa...@ksarma.com >>>> gchat: ksa...@gmail.com >>>> linkedin: www.linkedin.com/in/ksarma >> -- >> Tim Miller >> Instructor >> Boston Children's Hospital and Harvard Medical School >> timothy.mil...@childrens.harvard.edu >> 617-919-1223 >> > -- Tim Miller Instructor Boston Children's Hospital and Harvard Medical School timothy.mil...@childrens.harvard.edu 617-919-1223
