"2" doesn't mean much. The newer NER should have in its name the Behavior...
Perhaps something like MetaMap Usage <http://metamap.nlm.nih.gov/Docs/MM09_Usage.shtml> "--allow_overmatches" or "--allow_concept_gaps" or .....other? Since yTex already provides a pluggable *DictionaryLookup, *that seems like the best place to define the differing Behavior / Usage. https://cwiki.apache.org/confluence/display/CTAKES/User's+Guide https://code.google.com/p/ytex/wiki/DictionaryLookup_V05 AndyMC On Tue, Jun 10, 2014 at 9:55 AM, britt fitch <britt.fi...@gmail.com> wrote: > I don’t have an issue with the *-2 name. I also don’t have any objections > to renaming it. > > It might be nice to keep the old dictionary code around for a > release-worth of time but after that I would vote purging it. > If someone needs it after that it’ll be accessible in the archived > releases. > > > > On Jun 10, 2014, at 12:48 PM, Chen, Pei <pei.c...@childrens.harvard.edu> > wrote: > > > I think James has a fair point here. > > It may be worthwhile biting the bullet here and push forward. > > > > Since this essentially will be a full replacement of the > ctakes-dictionary-lookup module, a good option maybe to just replace the > entire module now and rename the existing module to * _deprecated. > > How do folks feel about that? In a nutshell, ctakes-dictionary-lookup-2 > is a faster algorithm with a simpler code base- and comparable results > (Sean has a full comparison in the documentation for those who are curious). > > > > --Pei > > > >> -----Original Message----- > >> From: britt fitch [mailto:britt.fi...@gmail.com] > >> Sent: Monday, June 09, 2014 5:42 PM > >> To: dev@ctakes.apache.org > >> Subject: Re: Preparing for an Apache cTAKES 3.2 Release? > >> > >> There is some documentation in the dictionary2 module under > >> /doc/DictionaryLookupHelp.{txt | docx} that gives some some details of > the > >> different lookup implementation options within that module that I found > >> helpful. > >> > >> > >> On Jun 9, 2014, at 5:17 PM, Masanz, James J. <masanz.ja...@mayo.edu> > >> wrote: > >> > >>> > >>> Will ctakes-dictionary-lookup2 remain the name for the new dictionary > >> lookup or will it have a name that reflects the algorithm? > >>> > >>> Is there a description of it that will help users to decide when to > use one > >> dictionary lookup component vs. the other. > >>> > >>> -- James > >>> > >>> -----Original Message----- > >>> From: Chen, Pei [mailto:pei.c...@childrens.harvard.edu] > >>> Sent: Friday, June 06, 2014 12:34 PM > >>> To: dev@ctakes.apache.org > >>> Subject: Preparing for an Apache cTAKES 3.2 Release? > >>> > >>> Hi, > >>> The 3.2 release was slated to be release end of this month (Jun 21). > >>> Since I volunteered to be the RM for this release, just like the past > >> releases, I was planning to create a branch/tag next week from trunk and > >> dev can continue. > >>> Feel free to take a look at any outstanding Jira issues [1] that you > may want > >> to be included in this release. > >>> > >>> Major changes include: > >>> CTAKES-197 Upgrade cTAKES to Java 7 > >>> CTAKES-292 Integrate YTEX with cTAKES > >>> CTAKES-82 Add ctakes-temporal module (Time and Event > Annotator + > >> DocTimeRel Property only?) > >>> > >>> [1] > >>> https://issues.apache.org/jira/browse/CTAKES- > >> 298?jql=fixVersion%20%3D% > >>> 203.2.0%20AND%20project%20%3D%20CTAKES > >>> > >>>> -----Original Message----- > >>>> From: Masanz, James J. [mailto:masanz.ja...@mayo.edu] > >>>> Sent: Wednesday, March 26, 2014 9:34 PM > >>>> To: 'dev@ctakes.apache.org' > >>>> Subject: RE: Apache cTAKES 3.2 Release? > >>>> > >>>> +1 to naming it 3.2 > >>>> > >>>> I'll review my JIRA items this week. > >>>> > >>>> -- James > >>>> > >>>> -----Original Message----- > >>>> From: Pei Chen [mailto:chen...@apache.org] > >>>> Sent: Wednesday, March 26, 2014 10:14 AM > >>>> To: dev@ctakes.apache.org > >>>> Subject: Apache cTAKES 3.2 Release? > >>>> > >>>> Hi, > >>>> > >>>> I think there are a lot of items slated for the next release, I > >>>> suggest we make it 3.2 instead of another patch release. > >>>> > >>>> I can volunteer to be the RM unless someone would like to take that > up... > >>>> > >>>> > >>>> > >>>> Main Changes pending for 3.2: > >>>> > >>>> CTAKES-197 Upgrade cTAKES to Java 7 > >>>> > >>>> CTAKES-292 Integrate YTEX with cTAKES > >>>> > >>>> CTAKES-82 Add ctakes-temporal module (Time and Event > Annotator > >> + > >>>> DocTimeRel Property only?) > >>>> > >>>> CTAKES-275 some of the older junit tests don't have the right > >>>> Project name in the run configurations > >>>> > >>>> CTAKES-268 Fix SentenceDetector training with updated OpenNLP > API > >>>> > >>>> CTAKES-162 Command line scripts leave the user back one > directory > >>>> > >>>> CTAKES-241 NullPointerException in ctakes-assertion > >>>> > >>>> CTAKES-288 Severity not set for DiseaseDisorderMention > >>>> > >>>> CTAKES-239 Medication Modifiers do not have the offsets > populated > >>>> > >>>> CTAKES-94 refactoring assertion module to use a cleartk-based > >>>> analysis engine (and include evaluation) > >>>> > >>>> CTAKES-232 change concept type > >>>> > >>>> CTAKES-76 get third party dependencies into Maven Central > >>>> > >>>> CTAKES-138 Remove 3rd party jars from our SVN > >>>> > >>>> CTAKES-74 Tokenizer PennTreeBank breaks with certain > apostrophes > >>>> in tokens. > >>>> > >>>> CTAKES-225 Common Type System - Add field to save > preferredText in > >>>> Segment > >>>> > >>>> CTAKES-222 FirstTokenPermLookupInitializerImpl to suppot > arraylist > >>>> of DictionaryLookupWindows > >>>> > >>>> CTAKES-213 ModifierExtractorAnnotator should produce > XxxxModifier > >>>> subtypes > >>>> > >>>> > >>>> > >>>> Full List: > >>>> > >>>> https://issues.apache.org/jira/browse/CTAKES- > >>>> > >> 288?jql=project%20%3D%20CTAKES%20AND%20fixVersion%20%3D%203.2% > >>>> > >> 20ORDER%20BY%20updated%20DESC%2C%20priority%20DESC%2C%20create > >>>> d%20ASC > > > >
