Hi How can i check the above steps are successfully being executed... Currently getting Error.. Have done these steps in dev ctakes... from svn not from your github stuff
This is what i did: java -cp ~/Downloads/hsqldb_1_8_0_10.jar org.hsqldb.util.SqlTool --rcfile custom_umls.rc custom_umls SET SCRIPTFORMAT TEXT SHUTDOWN java -jar ~/Downloads/hsqldb-2.3.4/hsqldb/lib/sqltool.jar --rcfile custom_umls.rc custom_umls SHUTDOWN Also sean can't we create a new fast dictionary via dictioanry_gui as 2.3.4 compatible version (any steps to do that) Error Log 12 Feb 2017 22:28:12 INFO JdbcConnectionFactory - Connecting to jdbc:hsqldb:file:resources/org/apache/ctakes/dictionary/ lookup/fast/custom_umls/custom_umls: 12 Feb 2017 22:28:12 FATAL ENGINE - could not reopen database org.hsqldb.HsqlException: wrong database file version at org.hsqldb.error.Error.error(Unknown Source) at org.hsqldb.error.Error.error(Unknown Source) at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source) at org.hsqldb.persist.Logger.open(Unknown Source) at org.hsqldb.Database.reopen(Unknown Source) at org.hsqldb.Database.open(Unknown Source) at org.hsqldb.DatabaseManager.getDatabase(Unknown Source) at org.hsqldb.DatabaseManager.newSession(Unknown Source) at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source) at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source) at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source) at java.sql.DriverManager.getConnection(DriverManager.java:664) at java.sql.DriverManager.getConnection(DriverManager.java:247) at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory. getConnection(JdbcConnectionFactory.java:84) at org.apache.ctakes.dictionary.lookup2.dictionary. JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91) at org.apache.ctakes.dictionary.lookup2.dictionary. JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:75) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorA ccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingCons tructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:422) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDictionary(DictionaryDesc riptorParser.java:205) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDictionaries(DictionaryDe scriptorParser.java:165) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDescriptor(DictionaryDesc riptorParser.java:133) at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator. initialize(AbstractJCasTermAnnotator.java:115) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. initialize(PrimitiveAnalysisEngine_impl.java:156) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( AnalysisEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( CompositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFram ework.java:387) at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254 ) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. initASB(AggregateAnalysisEngine_impl.java:431) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. initialize(AggregateAnalysisEngine_impl.java:185) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( AnalysisEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( CompositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFram ework.java:354) at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484) at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:476) at org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler. actionPerformed(AnnotatorOpenEventHandler.java:52) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022) at javax.swing.AbstractButton$Handler.actionPerformed(Abstra ctButton.java:2346) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultBut tonModel.java:402) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) at javax.swing.AbstractButton.doClick(AbstractButton.java:376) at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833) at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157) at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased( BasicMenuItemUI.java:877) at java.awt.Component.processMouseEvent(Component.java:6525) at javax.swing.JComponent.processMouseEvent(JComponent.java:3324) at java.awt.Component.processEvent(Component.java:6290) at java.awt.Container.processEvent(Container.java:2234) at java.awt.Component.dispatchEventImpl(Component.java:4881) at java.awt.Container.dispatchEventImpl(Container.java:2292) at java.awt.Component.dispatchEvent(Component.java:4703) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462) at java.awt.Container.dispatchEventImpl(Container.java:2278) at java.awt.Window.dispatchEventImpl(Window.java:2750) at java.awt.Component.dispatchEvent(Component.java:4703) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758) at java.awt.EventQueue.access$500(EventQueue.java:97) at java.awt.EventQueue$3.run(EventQueue.java:709) at java.awt.EventQueue$3.run(EventQueue.java:703) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(Protec tionDomain.java:75) at java.security.ProtectionDomain$1.doIntersectionPrivilege(Protec tionDomain.java:86) at java.awt.EventQueue$4.run(EventQueue.java:731) at java.awt.EventQueue$4.run(EventQueue.java:729) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(Protec tionDomain.java:75) at java.awt.EventQueue.dispatchEvent(EventQueue.java:728) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDi spatchThread.java:201) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispa tchThread.java:116) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDi spatchThread.java:105) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) 12 Feb 2017 22:28:12 FATAL ENGINE - could not reopen database org.hsqldb.HsqlException: wrong database file version at org.hsqldb.error.Error.error(Unknown Source) at org.hsqldb.error.Error.error(Unknown Source) at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source) at org.hsqldb.persist.Logger.open(Unknown Source) at org.hsqldb.Database.reopen(Unknown Source) at org.hsqldb.Database.open(Unknown Source) at org.hsqldb.DatabaseManager.getDatabase(Unknown Source) at org.hsqldb.DatabaseManager.newSession(Unknown Source) at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source) at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source) at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source) at java.sql.DriverManager.getConnection(DriverManager.java:664) at java.sql.DriverManager.getConnection(DriverManager.java:247) at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory. getConnection(JdbcConnectionFactory.java:84) at org.apache.ctakes.dictionary.lookup2.dictionary. JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91) at org.apache.ctakes.dictionary.lookup2.dictionary. JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:75) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorA ccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingCons tructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:422) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDictionary(DictionaryDesc riptorParser.java:205) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDictionaries(DictionaryDe scriptorParser.java:165) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDescriptor(DictionaryDesc riptorParser.java:133) at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator. initialize(AbstractJCasTermAnnotator.java:115) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. initialize(PrimitiveAnalysisEngine_impl.java:156) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( AnalysisEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( CompositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFram ework.java:387) at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254 ) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. initASB(AggregateAnalysisEngine_impl.java:431) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. initialize(AggregateAnalysisEngine_impl.java:185) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( AnalysisEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( CompositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFram ework.java:354) at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484) at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:476) at org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler. actionPerformed(AnnotatorOpenEventHandler.java:52) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022) at javax.swing.AbstractButton$Handler.actionPerformed(Abstra ctButton.java:2346) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultBut tonModel.java:402) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) at javax.swing.AbstractButton.doClick(AbstractButton.java:376) at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833) at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157) at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased( BasicMenuItemUI.java:877) at java.awt.Component.processMouseEvent(Component.java:6525) at javax.swing.JComponent.processMouseEvent(JComponent.java:3324) at java.awt.Component.processEvent(Component.java:6290) at java.awt.Container.processEvent(Container.java:2234) at java.awt.Component.dispatchEventImpl(Component.java:4881) at java.awt.Container.dispatchEventImpl(Container.java:2292) at java.awt.Component.dispatchEvent(Component.java:4703) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462) at java.awt.Container.dispatchEventImpl(Container.java:2278) at java.awt.Window.dispatchEventImpl(Window.java:2750) at java.awt.Component.dispatchEvent(Component.java:4703) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758) at java.awt.EventQueue.access$500(EventQueue.java:97) at java.awt.EventQueue$3.run(EventQueue.java:709) at java.awt.EventQueue$3.run(EventQueue.java:703) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(Protec tionDomain.java:75) at java.security.ProtectionDomain$1.doIntersectionPrivilege(Protec tionDomain.java:86) at java.awt.EventQueue$4.run(EventQueue.java:731) at java.awt.EventQueue$4.run(EventQueue.java:729) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(Protec tionDomain.java:75) at java.awt.EventQueue.dispatchEvent(EventQueue.java:728) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDi spatchThread.java:201) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispa tchThread.java:116) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDi spatchThread.java:105) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) 12 Feb 2017 22:28:12 ERROR JdbcConnectionFactory - Could not create Connection with jdbc:hsqldb:file:/Users/shahid/projects/workspace/ ctakes/resources/org/apache/ctakes/dictionary/lookup/fast/custom_umls/custom_umls as sa java.sql.SQLException: wrong database file version at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source) at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source) at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source) at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source) at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source) at java.sql.DriverManager.getConnection(DriverManager.java:664) at java.sql.DriverManager.getConnection(DriverManager.java:247) at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory. getConnection(JdbcConnectionFactory.java:84) at org.apache.ctakes.dictionary.lookup2.dictionary. JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91) at org.apache.ctakes.dictionary.lookup2.dictionary. JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:75) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorA ccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingCons tructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:422) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDictionary(DictionaryDesc riptorParser.java:205) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDictionaries(DictionaryDe scriptorParser.java:165) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDescriptor(DictionaryDesc riptorParser.java:133) at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator. initialize(AbstractJCasTermAnnotator.java:115) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. initialize(PrimitiveAnalysisEngine_impl.java:156) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( AnalysisEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( CompositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFram ework.java:387) at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254 ) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. initASB(AggregateAnalysisEngine_impl.java:431) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. initialize(AggregateAnalysisEngine_impl.java:185) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( AnalysisEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( CompositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFram ework.java:354) at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484) at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:476) at org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler. actionPerformed(AnnotatorOpenEventHandler.java:52) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022) at javax.swing.AbstractButton$Handler.actionPerformed(Abstra ctButton.java:2346) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultBut tonModel.java:402) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) at javax.swing.AbstractButton.doClick(AbstractButton.java:376) at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833) at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157) at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased( BasicMenuItemUI.java:877) at java.awt.Component.processMouseEvent(Component.java:6525) at javax.swing.JComponent.processMouseEvent(JComponent.java:3324) at java.awt.Component.processEvent(Component.java:6290) at java.awt.Container.processEvent(Container.java:2234) at java.awt.Component.dispatchEventImpl(Component.java:4881) at java.awt.Container.dispatchEventImpl(Container.java:2292) at java.awt.Component.dispatchEvent(Component.java:4703) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462) at java.awt.Container.dispatchEventImpl(Container.java:2278) at java.awt.Window.dispatchEventImpl(Window.java:2750) at java.awt.Component.dispatchEvent(Component.java:4703) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758) at java.awt.EventQueue.access$500(EventQueue.java:97) at java.awt.EventQueue$3.run(EventQueue.java:709) at java.awt.EventQueue$3.run(EventQueue.java:703) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(Protec tionDomain.java:75) at java.security.ProtectionDomain$1.doIntersectionPrivilege(Protec tionDomain.java:86) at java.awt.EventQueue$4.run(EventQueue.java:731) at java.awt.EventQueue$4.run(EventQueue.java:729) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(Protec tionDomain.java:75) at java.awt.EventQueue.dispatchEvent(EventQueue.java:728) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDi spatchThread.java:201) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispa tchThread.java:116) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDi spatchThread.java:105) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) Caused by: org.hsqldb.HsqlException: wrong database file version at org.hsqldb.error.Error.error(Unknown Source) at org.hsqldb.error.Error.error(Unknown Source) at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source) at org.hsqldb.persist.Logger.open(Unknown Source) at org.hsqldb.Database.reopen(Unknown Source) at org.hsqldb.Database.open(Unknown Source) at org.hsqldb.DatabaseManager.getDatabase(Unknown Source) at org.hsqldb.DatabaseManager.newSession(Unknown Source) ... 72 more On Tue, Jan 31, 2017 at 5:52 PM, Andrey Kurdumov <kant2...@googlemail.com> wrote: > Basically after LVG2016 update you have to store all databases in HSQLDB > 2.3.4 format. Thus you should upgrade data to that format. Other things > exactly the same. I intentionally don't introduce other changes in the > setup so it will be easier to incorporate to existing code. > > Steps to upgrade from HSQLDB 1.8 to 2.3.4 > 1. Open HSQLDB in the HSQLDb manager for version 1.8 (not 2.3.4) > 2. Run following commands: > SET SCRIPTFORMAT TEXT > SHUTDOWN > 3. Close HSQLDB manager > 4. Open database in the HSQLDB Manager for version 2.3.4 > 5. Execute > SHUTDOWN > 6. Now you have database updated. > > LVG 2016 already comes in HSQLDB 2.3.4 format. IIRC you need update only > ctakesnormx database to make pipeline works. > > > I definitely want to have my code support LVG data outside of cTakes > installation and now with latest LVG this is easily possible. Let me know > if you interested in this setup. > > 2017-01-29 22:35 GMT+06:00 shahid ashraf <sha...@trialx.com>: > >> Hi Andrey >> >> It would be good , if you update some steps how to setup new LVG. (Have >> also cloned your repo.) >> >> >> >> >> On Sun, Jan 29, 2017 at 5:59 PM, Andrey Kurdumov <kant2...@googlemail.com >> > wrote: >> >>> I update code in GitHub to include LVG 2017 >>> >>> 2017-01-29 15:29 GMT+06:00 Andrey Kurdumov <kant2...@googlemail.com>: >>> >>> > I ask guy who publish LVG to Maven update to version 2017, so I have to >>> > update my repository with LVG 2017 version. If you interested, I could >>> > update LVG to that version too. Now that's just simple change in >>> pom.xml >>> > >>> > 2017-01-29 14:39 GMT+06:00 Finan, Sean <Sean.Finan@childrens.harvard. >>> edu>: >>> > >>> >> Hi Andrey, >>> >> >>> >> You have recently been a great contributor to ctakes , and I really >>> >> appreciate that. You have answered devlist questions and your LVG >>> update >>> >> is a seriously big deal. Because of this, you are probably very >>> interested >>> >> in the upcoming release. You may have read emails that were on the >>> devlist >>> >> these past two days. I would like to assure you that no matter what >>> could >>> >> be read into these emails (ok, I can be a little grouchy before the >>> coffee >>> >> sets in) there are at least a couple of us who really want to get LVG >>> >> updated and will try our best to make certain that the next release >>> >> includes the improvement. We are happy and impressed with your >>> initiative >>> >> and furnishing a fully implemented update, and the 3.2.3 branch made >>> a few >>> >> weeks ago will just not pass muster in our opinion. Ergh, now I >>> sound like >>> >> a politician. That is not intended. I just want you to know that >>> even >>> >> though recent emails may imply that there is an immature power >>> struggle, >>> >> that is not the case. I think that everybody in the ctakes community >>> wants >>> >> to get a release out asap, and everybody wants it to be a quality >>> release. >>> >> Postponing the release a few weeks to get your updates into the >>> codebase >>> >> is, in my opinion, really important. I just want to let you know >>> that in >>> >> case you were aware of the 3.2.3 RC cut made a few weeks ago and >>> worry that >>> >> the update will not get into the official cut. I will do what I can >>> to >>> >> move ctakes into 2017. >>> >> >>> >> Regards, >>> >> Sean >>> >> >>> >> -----Original Message----- >>> >> From: Andrey Kurdumov [mailto:kant2...@googlemail.com] >>> >> Sent: Thursday, January 19, 2017 6:49 AM >>> >> To: cTakes developers list >>> >> Subject: Update LVG to 2016 version >>> >> >>> >> As I promise, I udpate cTakes to support LVG version 2016 year. >>> >> >>> >> https://urldefense.proofpoint.com/v2/url?u=https-3A__github. >>> >> com_kant2002_cTakes&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14J >>> >> ZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao >>> >> &m=RdfyvGDEhgrlIGv4Ue0X6DViLFyykHEokJgGzgoG5Vs&s=IJWxluJDIVh >>> >> ugnzWsfRl0TzL0LWzW6_kunc_GRJVew4&e= >>> >> >>> >> Please take a look. >>> >> In the github following modifications to current version of cTakes >>> >> - Removed two large files to make project fit GitHub restrictions. >>> >> - Some very small cleanup which placed in separate commit. >>> >> - Some fixes to ytex related tests, that's was required for me to pass >>> >> mvn install command. >>> >> >>> >> Assumptions: >>> >> - User should update ctakesnormx and other databases from HSQLdb 1.8 >>> to >>> >> HSQLDB 2.3.4 >>> >> >>> >> I already sign Apache ICLA as user akurdyumov for another project >>> (Apache >>> >> Cordova) so if you want update cTakes to LVG2016 please use my code. >>> If I >>> >> need something else to submit code to cTakes project, let me know. >>> >> >>> > >>> > >>> >> >> >> >> -- >> with Regards >> Shahid Ashraf >> > > -- with Regards Shahid Ashraf -- with Regards Shahid Ashraf
