Cool, .properties file looks ok. You could make database readonly by adding readonly=true to it if you needed that.
Did you able to test how LVG 2016/17 working in multithreaded environment? I did not test like that, because I need LVG for different purposes, so that's interesting to know how it works. 2017-02-13 15:22 GMT+06:00 shahid ashraf <sha...@trialx.com>: > > Thanks Andrey > > > I was able to successfully update the database... and use in dev through > cvd. > > i was using sqltool (which was wrong), i switched to DatabaseManager > > *java -cp ~/Downloads/hsqldb_1_8_0_10.jar org.hsqldb.util.DatabaseManager* > > *java -cp ~/Downloads/hsqldb-2.3.4/hsqldb/lib/hsqldb.jar > org.hsqldb.util.DatabaseManager* > > After above steps the properties file looks like: > > #HSQL Database Engine 2.3.4 > > #Mon Feb 13 11:34:05 IST 2017 > > version=2.3.4 > > modified=no > > tx_timestamp=0 > > > > > On Mon, Feb 13, 2017 at 1:38 AM, shahid ashraf <sha...@trialx.com> wrote: > >> >> >> Hi >> >> How can i check the above steps are successfully being executed... >> Currently getting Error.. Have done these steps in dev ctakes... from svn >> not from your github stuff >> >> This is what i did: >> java -cp ~/Downloads/hsqldb_1_8_0_10.jar org.hsqldb.util.SqlTool >> --rcfile custom_umls.rc custom_umls >> >> SET SCRIPTFORMAT TEXT >> SHUTDOWN >> >> java -jar ~/Downloads/hsqldb-2.3.4/hsqldb/lib/sqltool.jar --rcfile >> custom_umls.rc custom_umls >> >> SHUTDOWN >> >> Also sean can't we create a new fast dictionary via dictioanry_gui as >> 2.3.4 compatible version (any steps to do that) >> >> Error Log >> >> 12 Feb 2017 22:28:12 INFO JdbcConnectionFactory - Connecting to >> jdbc:hsqldb:file:resources/org/apache/ctakes/dictionary/look >> up/fast/custom_umls/custom_umls: >> >> 12 Feb 2017 22:28:12 FATAL ENGINE - could not reopen database >> >> org.hsqldb.HsqlException: wrong database file version >> >> at org.hsqldb.error.Error.error(Unknown Source) >> >> at org.hsqldb.error.Error.error(Unknown Source) >> >> at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source) >> >> at org.hsqldb.persist.Logger.open(Unknown Source) >> >> at org.hsqldb.Database.reopen(Unknown Source) >> >> at org.hsqldb.Database.open(Unknown Source) >> >> at org.hsqldb.DatabaseManager.getDatabase(Unknown Source) >> >> at org.hsqldb.DatabaseManager.newSession(Unknown Source) >> >> at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source) >> >> at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source) >> >> at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source) >> >> at java.sql.DriverManager.getConnection(DriverManager.java:664) >> >> at java.sql.DriverManager.getConnection(DriverManager.java:247) >> >> at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFact >> ory.getConnection(JdbcConnectionFactory.java:84) >> >> at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWord >> Dictionary.<init>(JdbcRareWordDictionary.java:91) >> >> at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWord >> Dictionary.<init>(JdbcRareWordDictionary.java:75) >> >> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) >> >> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Native >> ConstructorAccessorImpl.java:62) >> >> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(De >> legatingConstructorAccessorImpl.java:45) >> >> at java.lang.reflect.Constructor.newInstance(Constructor.java:422) >> >> at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDe >> scriptorParser.parseDictionary(DictionaryDescriptorParser.java:205) >> >> at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDe >> scriptorParser.parseDictionaries(DictionaryDescriptorParser.java:165) >> >> at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDe >> scriptorParser.parseDescriptor(DictionaryDescriptorParser.java:133) >> >> at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnno >> tator.initialize(AbstractJCasTermAnnotator.java:115) >> >> at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine >> _impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) >> >> at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine >> _impl.initialize(PrimitiveAnalysisEngine_impl.java:156) >> >> at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( >> AnalysisEngineFactory_impl.java:94) >> >> at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( >> CompositeResourceFactory_impl.java:62) >> >> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >> >> at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFram >> ework.java:387) >> >> at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_ >> impl.java:254) >> >> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine >> _impl.initASB(AggregateAnalysisEngine_impl.java:431) >> >> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine >> _impl.initializeAggregateAnalysisEngine(AggregateAnalysisEng >> ine_impl.java:375) >> >> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine >> _impl.initialize(AggregateAnalysisEngine_impl.java:185) >> >> at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( >> AnalysisEngineFactory_impl.java:94) >> >> at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( >> CompositeResourceFactory_impl.java:62) >> >> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >> >> at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFram >> ework.java:354) >> >> at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484) >> >> at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFra >> me.java:476) >> >> at org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler. >> actionPerformed(AnnotatorOpenEventHandler.java:52) >> >> at javax.swing.AbstractButton.fireActionPerformed(AbstractButto >> n.java:2022) >> >> at javax.swing.AbstractButton$Handler.actionPerformed(AbstractB >> utton.java:2346) >> >> at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultBu >> ttonModel.java:402) >> >> at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) >> >> at javax.swing.AbstractButton.doClick(AbstractButton.java:376) >> >> at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItem >> UI.java:833) >> >> at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157) >> >> at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased( >> BasicMenuItemUI.java:877) >> >> at java.awt.Component.processMouseEvent(Component.java:6525) >> >> at javax.swing.JComponent.processMouseEvent(JComponent.java:3324) >> >> at java.awt.Component.processEvent(Component.java:6290) >> >> at java.awt.Container.processEvent(Container.java:2234) >> >> at java.awt.Component.dispatchEventImpl(Component.java:4881) >> >> at java.awt.Container.dispatchEventImpl(Container.java:2292) >> >> at java.awt.Component.dispatchEvent(Component.java:4703) >> >> at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898) >> >> at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533) >> >> at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462) >> >> at java.awt.Container.dispatchEventImpl(Container.java:2278) >> >> at java.awt.Window.dispatchEventImpl(Window.java:2750) >> >> at java.awt.Component.dispatchEvent(Component.java:4703) >> >> at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758) >> >> at java.awt.EventQueue.access$500(EventQueue.java:97) >> >> at java.awt.EventQueue$3.run(EventQueue.java:709) >> >> at java.awt.EventQueue$3.run(EventQueue.java:703) >> >> at java.security.AccessController.doPrivileged(Native Method) >> >> at java.security.ProtectionDomain$1.doIntersectionPrivilege(Pro >> tectionDomain.java:75) >> >> at java.security.ProtectionDomain$1.doIntersectionPrivilege(Pro >> tectionDomain.java:86) >> >> at java.awt.EventQueue$4.run(EventQueue.java:731) >> >> at java.awt.EventQueue$4.run(EventQueue.java:729) >> >> at java.security.AccessController.doPrivileged(Native Method) >> >> at java.security.ProtectionDomain$1.doIntersectionPrivilege(Pro >> tectionDomain.java:75) >> >> at java.awt.EventQueue.dispatchEvent(EventQueue.java:728) >> >> at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDis >> patchThread.java:201) >> >> at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispat >> chThread.java:116) >> >> at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDis >> patchThread.java:105) >> >> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) >> >> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) >> >> at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) >> >> 12 Feb 2017 22:28:12 FATAL ENGINE - could not reopen database >> >> org.hsqldb.HsqlException: wrong database file version >> >> at org.hsqldb.error.Error.error(Unknown Source) >> >> at org.hsqldb.error.Error.error(Unknown Source) >> >> at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source) >> >> at org.hsqldb.persist.Logger.open(Unknown Source) >> >> at org.hsqldb.Database.reopen(Unknown Source) >> >> at org.hsqldb.Database.open(Unknown Source) >> >> at org.hsqldb.DatabaseManager.getDatabase(Unknown Source) >> >> at org.hsqldb.DatabaseManager.newSession(Unknown Source) >> >> at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source) >> >> at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source) >> >> at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source) >> >> at java.sql.DriverManager.getConnection(DriverManager.java:664) >> >> at java.sql.DriverManager.getConnection(DriverManager.java:247) >> >> at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFact >> ory.getConnection(JdbcConnectionFactory.java:84) >> >> at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWord >> Dictionary.<init>(JdbcRareWordDictionary.java:91) >> >> at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWord >> Dictionary.<init>(JdbcRareWordDictionary.java:75) >> >> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) >> >> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Native >> ConstructorAccessorImpl.java:62) >> >> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(De >> legatingConstructorAccessorImpl.java:45) >> >> at java.lang.reflect.Constructor.newInstance(Constructor.java:422) >> >> at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDe >> scriptorParser.parseDictionary(DictionaryDescriptorParser.java:205) >> >> at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDe >> scriptorParser.parseDictionaries(DictionaryDescriptorParser.java:165) >> >> at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDe >> scriptorParser.parseDescriptor(DictionaryDescriptorParser.java:133) >> >> at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnno >> tator.initialize(AbstractJCasTermAnnotator.java:115) >> >> at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine >> _impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) >> >> at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine >> _impl.initialize(PrimitiveAnalysisEngine_impl.java:156) >> >> at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( >> AnalysisEngineFactory_impl.java:94) >> >> at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( >> CompositeResourceFactory_impl.java:62) >> >> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >> >> at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFram >> ework.java:387) >> >> at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_ >> impl.java:254) >> >> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine >> _impl.initASB(AggregateAnalysisEngine_impl.java:431) >> >> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine >> _impl.initializeAggregateAnalysisEngine(AggregateAnalysisEng >> ine_impl.java:375) >> >> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine >> _impl.initialize(AggregateAnalysisEngine_impl.java:185) >> >> at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( >> AnalysisEngineFactory_impl.java:94) >> >> at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( >> CompositeResourceFactory_impl.java:62) >> >> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >> >> at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFram >> ework.java:354) >> >> at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484) >> >> at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFra >> me.java:476) >> >> at org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler. >> actionPerformed(AnnotatorOpenEventHandler.java:52) >> >> at javax.swing.AbstractButton.fireActionPerformed(AbstractButto >> n.java:2022) >> >> at javax.swing.AbstractButton$Handler.actionPerformed(AbstractB >> utton.java:2346) >> >> at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultBu >> ttonModel.java:402) >> >> at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) >> >> at javax.swing.AbstractButton.doClick(AbstractButton.java:376) >> >> at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItem >> UI.java:833) >> >> at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157) >> >> at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased( >> BasicMenuItemUI.java:877) >> >> at java.awt.Component.processMouseEvent(Component.java:6525) >> >> at javax.swing.JComponent.processMouseEvent(JComponent.java:3324) >> >> at java.awt.Component.processEvent(Component.java:6290) >> >> at java.awt.Container.processEvent(Container.java:2234) >> >> at java.awt.Component.dispatchEventImpl(Component.java:4881) >> >> at java.awt.Container.dispatchEventImpl(Container.java:2292) >> >> at java.awt.Component.dispatchEvent(Component.java:4703) >> >> at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898) >> >> at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533) >> >> at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462) >> >> at java.awt.Container.dispatchEventImpl(Container.java:2278) >> >> at java.awt.Window.dispatchEventImpl(Window.java:2750) >> >> at java.awt.Component.dispatchEvent(Component.java:4703) >> >> at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758) >> >> at java.awt.EventQueue.access$500(EventQueue.java:97) >> >> at java.awt.EventQueue$3.run(EventQueue.java:709) >> >> at java.awt.EventQueue$3.run(EventQueue.java:703) >> >> at java.security.AccessController.doPrivileged(Native Method) >> >> at java.security.ProtectionDomain$1.doIntersectionPrivilege(Pro >> tectionDomain.java:75) >> >> at java.security.ProtectionDomain$1.doIntersectionPrivilege(Pro >> tectionDomain.java:86) >> >> at java.awt.EventQueue$4.run(EventQueue.java:731) >> >> at java.awt.EventQueue$4.run(EventQueue.java:729) >> >> at java.security.AccessController.doPrivileged(Native Method) >> >> at java.security.ProtectionDomain$1.doIntersectionPrivilege(Pro >> tectionDomain.java:75) >> >> at java.awt.EventQueue.dispatchEvent(EventQueue.java:728) >> >> at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDis >> patchThread.java:201) >> >> at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispat >> chThread.java:116) >> >> at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDis >> patchThread.java:105) >> >> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) >> >> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) >> >> at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) >> >> >> 12 Feb 2017 22:28:12 ERROR JdbcConnectionFactory - Could not create >> Connection with jdbc:hsqldb:file:/Users/shahid >> /projects/workspace/ctakes/resources/org/apache/ctakes/dicti >> onary/lookup/fast/custom_umls/custom_umls as sa >> >> java.sql.SQLException: wrong database file version >> >> at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source) >> >> at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source) >> >> at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source) >> >> at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source) >> >> at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source) >> >> at java.sql.DriverManager.getConnection(DriverManager.java:664) >> >> at java.sql.DriverManager.getConnection(DriverManager.java:247) >> >> at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFact >> ory.getConnection(JdbcConnectionFactory.java:84) >> >> at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWord >> Dictionary.<init>(JdbcRareWordDictionary.java:91) >> >> at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWord >> Dictionary.<init>(JdbcRareWordDictionary.java:75) >> >> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) >> >> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Native >> ConstructorAccessorImpl.java:62) >> >> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(De >> legatingConstructorAccessorImpl.java:45) >> >> at java.lang.reflect.Constructor.newInstance(Constructor.java:422) >> >> at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDe >> scriptorParser.parseDictionary(DictionaryDescriptorParser.java:205) >> >> at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDe >> scriptorParser.parseDictionaries(DictionaryDescriptorParser.java:165) >> >> at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDe >> scriptorParser.parseDescriptor(DictionaryDescriptorParser.java:133) >> >> at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnno >> tator.initialize(AbstractJCasTermAnnotator.java:115) >> >> at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine >> _impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) >> >> at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine >> _impl.initialize(PrimitiveAnalysisEngine_impl.java:156) >> >> at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( >> AnalysisEngineFactory_impl.java:94) >> >> at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( >> CompositeResourceFactory_impl.java:62) >> >> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >> >> at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFram >> ework.java:387) >> >> at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_ >> impl.java:254) >> >> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine >> _impl.initASB(AggregateAnalysisEngine_impl.java:431) >> >> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine >> _impl.initializeAggregateAnalysisEngine(AggregateAnalysisEng >> ine_impl.java:375) >> >> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine >> _impl.initialize(AggregateAnalysisEngine_impl.java:185) >> >> at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( >> AnalysisEngineFactory_impl.java:94) >> >> at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( >> CompositeResourceFactory_impl.java:62) >> >> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >> >> at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFram >> ework.java:354) >> >> at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484) >> >> at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFra >> me.java:476) >> >> at org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler. >> actionPerformed(AnnotatorOpenEventHandler.java:52) >> >> at javax.swing.AbstractButton.fireActionPerformed(AbstractButto >> n.java:2022) >> >> at javax.swing.AbstractButton$Handler.actionPerformed(AbstractB >> utton.java:2346) >> >> at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultBu >> ttonModel.java:402) >> >> at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) >> >> at javax.swing.AbstractButton.doClick(AbstractButton.java:376) >> >> at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItem >> UI.java:833) >> >> at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157) >> >> at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased( >> BasicMenuItemUI.java:877) >> >> at java.awt.Component.processMouseEvent(Component.java:6525) >> >> at javax.swing.JComponent.processMouseEvent(JComponent.java:3324) >> >> at java.awt.Component.processEvent(Component.java:6290) >> >> at java.awt.Container.processEvent(Container.java:2234) >> >> at java.awt.Component.dispatchEventImpl(Component.java:4881) >> >> at java.awt.Container.dispatchEventImpl(Container.java:2292) >> >> at java.awt.Component.dispatchEvent(Component.java:4703) >> >> at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898) >> >> at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533) >> >> at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462) >> >> at java.awt.Container.dispatchEventImpl(Container.java:2278) >> >> at java.awt.Window.dispatchEventImpl(Window.java:2750) >> >> at java.awt.Component.dispatchEvent(Component.java:4703) >> >> at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758) >> >> at java.awt.EventQueue.access$500(EventQueue.java:97) >> >> at java.awt.EventQueue$3.run(EventQueue.java:709) >> >> at java.awt.EventQueue$3.run(EventQueue.java:703) >> >> at java.security.AccessController.doPrivileged(Native Method) >> >> at java.security.ProtectionDomain$1.doIntersectionPrivilege(Pro >> tectionDomain.java:75) >> >> at java.security.ProtectionDomain$1.doIntersectionPrivilege(Pro >> tectionDomain.java:86) >> >> at java.awt.EventQueue$4.run(EventQueue.java:731) >> >> at java.awt.EventQueue$4.run(EventQueue.java:729) >> >> at java.security.AccessController.doPrivileged(Native Method) >> >> at java.security.ProtectionDomain$1.doIntersectionPrivilege(Pro >> tectionDomain.java:75) >> >> at java.awt.EventQueue.dispatchEvent(EventQueue.java:728) >> >> at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDis >> patchThread.java:201) >> >> at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispat >> chThread.java:116) >> >> at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDis >> patchThread.java:105) >> >> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) >> >> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) >> >> at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) >> >> Caused by: org.hsqldb.HsqlException: wrong database file version >> >> at org.hsqldb.error.Error.error(Unknown Source) >> >> at org.hsqldb.error.Error.error(Unknown Source) >> >> at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source) >> >> at org.hsqldb.persist.Logger.open(Unknown Source) >> >> at org.hsqldb.Database.reopen(Unknown Source) >> >> at org.hsqldb.Database.open(Unknown Source) >> >> at org.hsqldb.DatabaseManager.getDatabase(Unknown Source) >> >> at org.hsqldb.DatabaseManager.newSession(Unknown Source) >> >> ... 72 more >> >> >> >> On Tue, Jan 31, 2017 at 5:52 PM, Andrey Kurdumov <kant2...@googlemail.com >> > wrote: >> >>> Basically after LVG2016 update you have to store all databases in HSQLDB >>> 2.3.4 format. Thus you should upgrade data to that format. Other things >>> exactly the same. I intentionally don't introduce other changes in the >>> setup so it will be easier to incorporate to existing code. >>> >>> Steps to upgrade from HSQLDB 1.8 to 2.3.4 >>> 1. Open HSQLDB in the HSQLDb manager for version 1.8 (not 2.3.4) >>> 2. Run following commands: >>> SET SCRIPTFORMAT TEXT >>> SHUTDOWN >>> 3. Close HSQLDB manager >>> 4. Open database in the HSQLDB Manager for version 2.3.4 >>> 5. Execute >>> SHUTDOWN >>> 6. Now you have database updated. >>> >>> LVG 2016 already comes in HSQLDB 2.3.4 format. IIRC you need update only >>> ctakesnormx database to make pipeline works. >>> >>> >>> I definitely want to have my code support LVG data outside of cTakes >>> installation and now with latest LVG this is easily possible. Let me know >>> if you interested in this setup. >>> >>> 2017-01-29 22:35 GMT+06:00 shahid ashraf <sha...@trialx.com>: >>> >>>> Hi Andrey >>>> >>>> It would be good , if you update some steps how to setup new LVG. (Have >>>> also cloned your repo.) >>>> >>>> >>>> >>>> >>>> On Sun, Jan 29, 2017 at 5:59 PM, Andrey Kurdumov < >>>> kant2...@googlemail.com> wrote: >>>> >>>>> I update code in GitHub to include LVG 2017 >>>>> >>>>> 2017-01-29 15:29 GMT+06:00 Andrey Kurdumov <kant2...@googlemail.com>: >>>>> >>>>> > I ask guy who publish LVG to Maven update to version 2017, so I have >>>>> to >>>>> > update my repository with LVG 2017 version. If you interested, I >>>>> could >>>>> > update LVG to that version too. Now that's just simple change in >>>>> pom.xml >>>>> > >>>>> > 2017-01-29 14:39 GMT+06:00 Finan, Sean < >>>>> sean.fi...@childrens.harvard.edu>: >>>>> > >>>>> >> Hi Andrey, >>>>> >> >>>>> >> You have recently been a great contributor to ctakes , and I really >>>>> >> appreciate that. You have answered devlist questions and your LVG >>>>> update >>>>> >> is a seriously big deal. Because of this, you are probably very >>>>> interested >>>>> >> in the upcoming release. You may have read emails that were on the >>>>> devlist >>>>> >> these past two days. I would like to assure you that no matter >>>>> what could >>>>> >> be read into these emails (ok, I can be a little grouchy before the >>>>> coffee >>>>> >> sets in) there are at least a couple of us who really want to get >>>>> LVG >>>>> >> updated and will try our best to make certain that the next release >>>>> >> includes the improvement. We are happy and impressed with your >>>>> initiative >>>>> >> and furnishing a fully implemented update, and the 3.2.3 branch >>>>> made a few >>>>> >> weeks ago will just not pass muster in our opinion. Ergh, now I >>>>> sound like >>>>> >> a politician. That is not intended. I just want you to know that >>>>> even >>>>> >> though recent emails may imply that there is an immature power >>>>> struggle, >>>>> >> that is not the case. I think that everybody in the ctakes >>>>> community wants >>>>> >> to get a release out asap, and everybody wants it to be a quality >>>>> release. >>>>> >> Postponing the release a few weeks to get your updates into the >>>>> codebase >>>>> >> is, in my opinion, really important. I just want to let you know >>>>> that in >>>>> >> case you were aware of the 3.2.3 RC cut made a few weeks ago and >>>>> worry that >>>>> >> the update will not get into the official cut. I will do what I >>>>> can to >>>>> >> move ctakes into 2017. >>>>> >> >>>>> >> Regards, >>>>> >> Sean >>>>> >> >>>>> >> -----Original Message----- >>>>> >> From: Andrey Kurdumov [mailto:kant2...@googlemail.com] >>>>> >> Sent: Thursday, January 19, 2017 6:49 AM >>>>> >> To: cTakes developers list >>>>> >> Subject: Update LVG to 2016 version >>>>> >> >>>>> >> As I promise, I udpate cTakes to support LVG version 2016 year. >>>>> >> >>>>> >> https://urldefense.proofpoint.com/v2/url?u=https-3A__github. >>>>> >> com_kant2002_cTakes&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14J >>>>> >> ZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao >>>>> >> &m=RdfyvGDEhgrlIGv4Ue0X6DViLFyykHEokJgGzgoG5Vs&s=IJWxluJDIVh >>>>> >> ugnzWsfRl0TzL0LWzW6_kunc_GRJVew4&e= >>>>> >> >>>>> >> Please take a look. >>>>> >> In the github following modifications to current version of cTakes >>>>> >> - Removed two large files to make project fit GitHub restrictions. >>>>> >> - Some very small cleanup which placed in separate commit. >>>>> >> - Some fixes to ytex related tests, that's was required for me to >>>>> pass >>>>> >> mvn install command. >>>>> >> >>>>> >> Assumptions: >>>>> >> - User should update ctakesnormx and other databases from HSQLdb >>>>> 1.8 to >>>>> >> HSQLDB 2.3.4 >>>>> >> >>>>> >> I already sign Apache ICLA as user akurdyumov for another project >>>>> (Apache >>>>> >> Cordova) so if you want update cTakes to LVG2016 please use my >>>>> code. If I >>>>> >> need something else to submit code to cTakes project, let me know. >>>>> >> >>>>> > >>>>> > >>>>> >>>> >>>> >>>> >>>> -- >>>> with Regards >>>> Shahid Ashraf >>>> >>> >>> >> >> >> -- >> with Regards >> Shahid Ashraf >> >> >> >> -- >> with Regards >> Shahid Ashraf >> > > > > -- > with Regards > Shahid Ashraf >
