And for those following along at home, I got the machine set up in velocity 
mode and the pid tuned fairly well.  The following error is less than .0002 and 
the machine runs very nicely, and I can now Home to the index pulse on the 
encoder (which is where this all began)!  Yay.

Below are links to my .ini and .hal and plots of the f-error for each axis in 
case it helps someone in the future.

Thanks,
-Tom

http://bgp.nu/~tom/pub/EMCO-CL.hal
http://bgp.nu/~tom/pub/EMCO-CL.ini

http://bgp.nu/~tom/pub/pid-X.png
http://bgp.nu/~tom/pub/pid-Y.png
http://bgp.nu/~tom/pub/pid-Z.png



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