i did not load the color table separately in addition to the .annot. do i need to? i didn't create a customized color table. the parcellation (?h.aparc.splitcingulate.annot) i created using mris_divide_parcellation automatically generated the label names, but when it loads, the names for the colored labels are not accurate.
the sizes of the subregions are certainly different, but i don't know how they are ordered/numbered and it isn't obvious in looking at their volume measurements which is which. thanks again, -cate ----- Original Message ----- From: Doug Greve <[EMAIL PROTECTED]> Date: Sunday, May 13, 2007 7:55 pm Subject: Re: [Freesurfer] labels for split parcellation To: Nick Schmansky <[EMAIL PROTECTED]> Cc: Catherine Hartley <[EMAIL PROTECTED]>, Freesurfer Mailing List <[email protected]> > The color table should be embedded in the annot. Are you sure you're > loading the new annotation? Is it different than ?h.aparc.annot. They > should at least have slightly different sizes (and diff with unix > diff). > > doug > > > On Sun, 13 May 2007, Nick Schmansky wrote: > > > Cate, > > > > Have you loaded your own colortable? ie, the one that contains your > own > > labels. In tksurfer, its File -> Label -> Load Color Table > > > > Nick > > > > On Sun, 2007-05-13 at 15:32 -0400, Catherine Hartley wrote: > >> Hi, > >> > >> I've used mris_divide_parcellation to generate split the automatic > >> parcellation into subregions. When I view the resulting annotation > >> in tksurfer, the label names do not correspond to the subdivision > >> names, so I am unable to tell which division is which (ie, which is > >> rostralanteriorcingulate_div4, as none of them have this name). Is > >> there a way to display these new label names? > >> > >> Thanks, > >> Cate > >> _______________________________________________ > >> Freesurfer mailing list > >> [email protected] > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> > > > > _______________________________________________ > > Freesurfer mailing list > > [email protected] > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > [EMAIL PROTECTED] > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > In order to help us help you, please follow the steps in: > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
