ok, we'll have to check. I thought this was working. Nick: can you take a
look?
On Sun, 13 May 2007, Catherine Alexandra Hartley wrote:
Hi Bruce,
Only one parcellation was loaded. It looks great. There's no problem with the
colors, just the label names. They don't correspond to the names of the
parcellation if i do an aparc2stats, for example.
Thanks,
Cate
----- Original Message -----
From: Bruce Fischl <[EMAIL PROTECTED]>
Date: Sunday, May 13, 2007 8:34 pm
Subject: Re: [Freesurfer] labels for split parcellation
To: Catherine Alexandra Hartley <[EMAIL PROTECTED]>
Cc: Doug Greve <[EMAIL PROTECTED]>, Freesurfer Mailing List
<[email protected]>, Nick Schmansky <[EMAIL PROTECTED]>
Hi Cate,
do you have two parcellations loaded at the same time? Be sure you
only
load the new parcellation (whatever you called it). It should have a
colortable in it that accounts for the new units.
cheers,
Bruce
On Sun, 13 May 2007, Catherine Alexandra Hartley wrote:
i did not load the color table separately in addition to the .annot.
do i need to? i didn't create a customized color table. the
parcellation (?h.aparc.splitcingulate.annot) i created using
mris_divide_parcellation automatically generated the label names, but
when it loads, the names for the colored labels are not accurate.
the sizes of the subregions are certainly different, but i don't
know how they are ordered/numbered and it isn't obvious in looking at
their volume measurements which is which.
thanks again,
-cate
----- Original Message -----
From: Doug Greve <[EMAIL PROTECTED]>
Date: Sunday, May 13, 2007 7:55 pm
Subject: Re: [Freesurfer] labels for split parcellation
To: Nick Schmansky <[EMAIL PROTECTED]>
Cc: Catherine Hartley <[EMAIL PROTECTED]>, Freesurfer Mailing List
<[email protected]>
The color table should be embedded in the annot. Are you sure you're
loading the new annotation? Is it different than ?h.aparc.annot. They
should at least have slightly different sizes (and diff with unix
diff).
doug
On Sun, 13 May 2007, Nick Schmansky wrote:
Cate,
Have you loaded your own colortable? ie, the one that contains your
own
labels. In tksurfer, its File -> Label -> Load Color Table
Nick
On Sun, 2007-05-13 at 15:32 -0400, Catherine Hartley wrote:
Hi,
I've used mris_divide_parcellation to generate split the automatic
parcellation into subregions. When I view the resulting annotation
in tksurfer, the label names do not correspond to the subdivision
names, so I am unable to tell which division is which (ie, which
is
rostralanteriorcingulate_div4, as none of them have this name).
Is
there a way to display these new label names?
Thanks,
Cate
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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