Hi Bruce, Only one parcellation was loaded. It looks great. There's no problem with the colors, just the label names. They don't correspond to the names of the parcellation if i do an aparc2stats, for example.
Thanks, Cate ----- Original Message ----- From: Bruce Fischl <[EMAIL PROTECTED]> Date: Sunday, May 13, 2007 8:34 pm Subject: Re: [Freesurfer] labels for split parcellation To: Catherine Alexandra Hartley <[EMAIL PROTECTED]> Cc: Doug Greve <[EMAIL PROTECTED]>, Freesurfer Mailing List <[email protected]>, Nick Schmansky <[EMAIL PROTECTED]> > Hi Cate, > > do you have two parcellations loaded at the same time? Be sure you > only > load the new parcellation (whatever you called it). It should have a > colortable in it that accounts for the new units. > > cheers, > Bruce > > > On Sun, 13 May 2007, Catherine Alexandra Hartley wrote: > > > i did not load the color table separately in addition to the .annot. > do i need to? i didn't create a customized color table. the > parcellation (?h.aparc.splitcingulate.annot) i created using > mris_divide_parcellation automatically generated the label names, but > when it loads, the names for the colored labels are not accurate. > > > > the sizes of the subregions are certainly different, but i don't > know how they are ordered/numbered and it isn't obvious in looking at > their volume measurements which is which. > > > > thanks again, > > -cate > > > > > > ----- Original Message ----- > > From: Doug Greve <[EMAIL PROTECTED]> > > Date: Sunday, May 13, 2007 7:55 pm > > Subject: Re: [Freesurfer] labels for split parcellation > > To: Nick Schmansky <[EMAIL PROTECTED]> > > Cc: Catherine Hartley <[EMAIL PROTECTED]>, Freesurfer Mailing List > > <[email protected]> > > > >> The color table should be embedded in the annot. Are you sure you're > >> loading the new annotation? Is it different than ?h.aparc.annot. They > >> should at least have slightly different sizes (and diff with unix > >> diff). > >> > >> doug > >> > >> > >> On Sun, 13 May 2007, Nick Schmansky wrote: > >> > >>> Cate, > >>> > >>> Have you loaded your own colortable? ie, the one that contains your > >> own > >>> labels. In tksurfer, its File -> Label -> Load Color Table > >>> > >>> Nick > >>> > >>> On Sun, 2007-05-13 at 15:32 -0400, Catherine Hartley wrote: > >>>> Hi, > >>>> > >>>> I've used mris_divide_parcellation to generate split the automatic > >>>> parcellation into subregions. When I view the resulting annotation > >>>> in tksurfer, the label names do not correspond to the subdivision > >>>> names, so I am unable to tell which division is which (ie, which > is > >>>> rostralanteriorcingulate_div4, as none of them have this name). > Is > >>>> there a way to display these new label names? > >>>> > >>>> Thanks, > >>>> Cate > >>>> _______________________________________________ > >>>> Freesurfer mailing list > >>>> [email protected] > >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>>> > >>>> > >>> > >>> _______________________________________________ > >>> Freesurfer mailing list > >>> [email protected] > >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>> > >>> > >>> > >> > >> -- > >> Douglas N. Greve, Ph.D. > >> MGH-NMR Center > >> [EMAIL PROTECTED] > >> Phone Number: 617-724-2358 > >> Fax: 617-726-7422 > >> > >> In order to help us help you, please follow the steps in: > >> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >> > > _______________________________________________ > > Freesurfer mailing list > > [email protected] > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
