you need to tell it what format to write the output in. Try using - --tfmt curv
I would have thought you needed --sfmt curv also. I'm just guessing though. Doug is the expert on this. cheers, Bruce On Tue, 4 Aug 2009, Feng-Xian Yan wrote: > Hi, > > I had asked two problems before; one is what is coordinates when I > type mris_convert > -c lh.thickness lh.white lh.thickness.asc, and another is if the asc file > doesn't use Tal coordinate, what commands do I type to obtain the thickness > asc with Tal coordinate?, and then you responded me with ?the coordinates > are native RAS. You can use mri_surf2surf to convert the surface to tal > coords with the talairach.xfm.? > > > > So, first, I change the native RAS cooridinate to Tal coordinate with > ?mri_surf2surf --srcsubject noise0.5_0 --srcsurfval thickness --trgsubject > noise0.5_0 --trgsurfval noise0.5_0_tal.xfm --hemi lh --sval-tal-xyz orig > --tval-xyz? > > srcsubject = noise0.5_0 > srcval = thickness > srctype = > trgsubject = noise0.5_0 > trgval = noise0.5_0_tal.xfm > trgtype = > surfreg = sphere.reg > srchemi = lh > trghemi = lh > frame = 0 > fwhm-in = 0 > fwhm-out = 0 > Reading source surface reg > /usr/local/freesurfer/subjects/analysis/noise_analysis//noise_0.5_1_5//noise0.5_0/surf/lh.sphere.reg > Loading source data > Reading surface file > /usr/local/freesurfer/subjects/analysis/noise_analysis//noise_0.5_1_5//noise0.5_0/surf/lh.orig > Applying MNI305 talairach transform > 0.966 0.002 -0.004 0.426; > 0.018 0.989 0.041 -19.382; > -0.006 0.032 0.962 17.438; > 0.000 0.000 0.000 1.000; > INFO: surfcluster: NOT fixing group surface area > INFO: trgsubject = srcsubject > Saving target data > > > > Then, I obtain the thickness asc file with Tal coordinate using this command > ?mris_convert -c lh.noise0.5_0_tal.xfm lh.white lh.thickness.asc? > > > > But, this has an error: > > MRISreadBinaryCurvature: incompatible vertex number in file > ./lh.noise0.5_0_tal.xfm > > > What?s wrong? Would you tell me how to resolve? > > > > Thank you in advance! > > > > Feng-Xian > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
