what is your new command line?
Feng-Xian Yan wrote: > Hi, > I change the input and output from curv to surface, but the error > is the same. > So, how do I do to resolve it? > > Thank you in advance! > > Feng-Xian > > > > > 2009/8/5 Douglas N Greve <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > > The output is not a curvature file, it is a surface. > > doug > > Feng-Xian Yan wrote: > > > > Hi, > > > > I try again with you said. First, I type this command“mri_surf2surf > > --srcsubject noise0.5_0 --srcsurfval thickness --sfmt curv > > --trgsubject noise0.5_0 --trgsurfval noise0.5_0_tal.xfm --tfmt curv > > --hemi lh --sval-tal-xyz orig --tval-xyz”, then I type “mris_convert > > -c lh.noise0.5_0_tal.xfm lh.white lh.thickness.asc”. > > > > But, the error is the same.” MRISreadBinaryCurvature: incompatible > > vertex number in file ./lh.noise0.5_0_tal.xfm” > > > > > > What’s wrong? Would you help me to resolve this problem? Because I > > really want to obtain the thickness ascii file with Tal coordinate. > > Or, have you another method to obtain the thickness ascii file with > > Tal coordinate? > > > > Thank you in advance! > > > > Feng-Xian > > > > > > > > 2009/8/4 Bruce Fischl <fis...@nmr.mgh.harvard.edu > <mailto:fis...@nmr.mgh.harvard.edu> > > <mailto:fis...@nmr.mgh.harvard.edu > <mailto:fis...@nmr.mgh.harvard.edu>>> > > > > you need to tell it what format to write the output in. Try > using - > > --tfmt curv > > > > I would have thought you needed --sfmt curv also. I'm just > > guessing though. Doug is the expert on this. > > > > cheers, > > Bruce > > > > > > > > On Tue, 4 Aug 2009, Feng-Xian Yan wrote: > > > > Hi, > > > > I had asked two problems before; one is what is > coordinates when I > > type mris_convert > > -c lh.thickness lh.white lh.thickness.asc, and another is if > > the asc file > > doesn't use Tal coordinate, what commands do I type to > obtain > > the thickness > > asc with Tal coordinate?, and then you responded me with > ?the > > coordinates > > are native RAS. You can use mri_surf2surf to convert the > > surface to tal > > coords with the talairach.xfm.? > > > > > > > > So, first, I change the native RAS cooridinate to Tal > > coordinate with > > ?mri_surf2surf --srcsubject noise0.5_0 --srcsurfval > thickness > > --trgsubject > > noise0.5_0 --trgsurfval noise0.5_0_tal.xfm --hemi lh > > --sval-tal-xyz orig > > --tval-xyz? > > > > srcsubject = noise0.5_0 > > srcval = thickness > > srctype = > > trgsubject = noise0.5_0 > > trgval = noise0.5_0_tal.xfm > > trgtype = > > surfreg = sphere.reg > > srchemi = lh > > trghemi = lh > > frame = 0 > > fwhm-in = 0 > > fwhm-out = 0 > > Reading source surface reg > > > > /usr/local/freesurfer/subjects/analysis/noise_analysis//noise_0.5_1_5//noise0.5_0/surf/lh.sphere.reg > > Loading source data > > Reading surface file > > > > /usr/local/freesurfer/subjects/analysis/noise_analysis//noise_0.5_1_5//noise0.5_0/surf/lh.orig > > Applying MNI305 talairach transform > > 0.966 0.002 -0.004 0.426; > > 0.018 0.989 0.041 -19.382; > > -0.006 0.032 0.962 17.438; > > 0.000 0.000 0.000 1.000; > > INFO: surfcluster: NOT fixing group surface area > > INFO: trgsubject = srcsubject > > Saving target data > > > > > > > > Then, I obtain the thickness asc file with Tal coordinate > > using this command > > ?mris_convert -c lh.noise0.5_0_tal.xfm lh.white > lh.thickness.asc? > > > > > > > > But, this has an error: > > > > MRISreadBinaryCurvature: incompatible vertex number in file > > ./lh.noise0.5_0_tal.xfm > > > > > > What?s wrong? Would you tell me how to resolve? > > > > > > > > Thank you in advance! > > > > > > > > Feng-Xian > > > > > > > ------------------------------------------------------------------------ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > In order to help us help you, please follow the steps in: > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
