The parcellation is created using the surfaces and a cortical atlas so you shouldn't have to worry about the subcortical segmentation overlabeling like that. Take a look at the aparc+aseg.mgz in tkmedit.
-- On Fri, 4 Sep 2009, Kim, Miyoung wrote: > Hi. > > Just a quick question - is cortical parcellation performed based on the pial > line (red line) or the cortical segmentation (brown shade)? The reason for > this question is that after recon2 we have an area in the lower occipital > cortical region that is shaded as "cerebellum" (see attached) although the > pial line seems to have correctly outlined it. Is this a potential problem > that we need to fix and if so what should we do? Thanks for your help in > advance! > > > Miyoung > > > ________________________________ > This message contains confidential information and is intended only for the > individual named. If you are not the named addressee you should not > disseminate, distribute or copy this e-mail. Please notify the sender > immediately by e-mail if you have received this e-mail by mistake and delete > this e-mail from your system. E-mail transmission cannot be guaranteed to be > secure or error-free as information could be intercepted, corrupted, lost, > destroyed, arrive late or incomplete, or contain viruses. The sender > therefore does not accept liability for any errors or omissions in the > contents of this message, which arise as a result of e-mail transmission. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
