Hi Leonardo, the outputs are listed on our wiki. If you want to extract a single structure you can use mri_binarize using the indices in the $FREESURFER_HOME/FreeSurferColorLUT.txt file.
cheers Bruce On Sat, 12 Jun 2010, Leonardo Chesi wrote: > Hi, after the segmentation process, we obtain a lots of file that I can't > understand what they represent. Infact I know the mean of the file aseg.mgz > (that is a mask of the segmentation) and norm.mgz but for example I can't > understand the difference between brainmask.mgz and brainmask_auto.mgz. Can > you help me with a list of the output? And can I obtain the volume rendering > of only one part of the segmented structure? (es. Hippocampal)?? > > Thanks for your help > > Leonardo > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
