Hi Luke, For subcortical structures, you would want to use the volume information provided by the aseg.mgz and not information from the surfaces (which are intended for cortical measures). Allison
On Wed, 22 Dec 2010, Luke Bloy wrote: > Hello, > > I'm new to freeSurfer and just starting to look around so I apologize if > this question is a bit naive. > > When I look at segmentation results, that include deep brain nuclei > (thalamus etc) I see that they are all contained inside of the white > matter surface. is there away to edit the surface so that these > boundaries are represented? > > I imagine that this would change the topology of the WM region thus it > might be difficult, Is there away to generate surfaces form these > regions on there own? > > Thanks > Luke > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
