Hi Luke, you can use mri_mc (marching cubes) on any of the labels to generate a surface if you want. The list of labels is in $FREESURFER_HOME/FreeSurferColorLUT.txt
cheers Bruce On Wed, 22 Dec 2010, Luke Bloy wrote: > Hello, > > I'm new to freeSurfer and just starting to look around so I apologize if > this question is a bit naive. > > When I look at segmentation results, that include deep brain nuclei > (thalamus etc) I see that they are all contained inside of the white > matter surface. is there away to edit the surface so that these > boundaries are represented? > > I imagine that this would change the topology of the WM region thus it > might be difficult, Is there away to generate surfaces form these > regions on there own? > > Thanks > Luke > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
